“Human Brain Development through the Lens of Cerebral Organoid Models”

by Andrews, Madeline G., Nowakowski, Tomasz J.
Published in Brain Res (2019)

Identification of cell types in a mouse brain single-cell atlas using low sampling coverage

by Bhaduri, Aparna, Nowakowski, Tomasz J, Pollen, Alex A, Kriegstein, Arnold R
Published in BMC Biol (2018)

Are Organoids Ready for Prime Time?

by Bhaduri, Aparna, Andrews, Madeline G., Kriegstein, Arnold R., Nowakowski, Tomasz J.
Published in Cell Stem Cell (2020)

Transformation of the Radial Glia Scaffold Demarcates Two Stages of Human Cerebral Cortex Development

by Nowakowski, Tomasz J., Pollen, Alex A., Sandoval-Espinosa, Carmen, Kriegstein, Arnold R.
Published in Neuron (2016)

Single-cell atlas of early human brain development highlights heterogeneity of human neuroepithelial cells and early radial glia

by Eze, Ugomma C., Bhaduri, Aparna, Haeussler, Maximilian, Nowakowski, Tomasz J., Kriegstein, Arnold R.
Published in Nat Neurosci (2021)

Novel lines of Pax6(-/- )embryonic stem cells exhibit reduced neurogenic capacity without loss of viability

by Quinn, Jane C, Molinek, Michael, Nowakowski, Tomasz J, Mason, John O, Price, David J
Published 2010

The impact of microRNAs on transcriptional heterogeneity and gene co-expression across single embryonic stem cells

by Gambardella, Gennaro, Carissimo, Annamaria, Chen, Amy, Cutillo, Luisa, Nowakowski, Tomasz J., di Bernardo, Diego, Blelloch, Robert
Published in Nat Commun (2017)

Radial glia require PDGFD/PDGFRß signaling in human but not mouse neocortex

by Lui, Jan H., Nowakowski, Tomasz J., Pollen, Alex A., Javaherian, Ashkan, Kriegstein, Arnold R., Oldham, Michael C.
Published in Nature (2014)

A Primate lncRNA Mediates Notch Signaling During Neuronal Development by Sequestering miRNA

by Rani, Neha, Nowakowski, Tomasz J, Zhou, Hongjun, Godshalk, Sirie E., Lisi, Véronique, Kriegstein, Arnold R., Kosik, Kenneth S.
Published in Neuron (2016)

Human iPSC-derived cerebral organoids model cellular features of lissencephaly and reveal prolonged mitosis of outer radial glia

by Bershteyn, Marina, Nowakowski, Tomasz J., Pollen, Alex A., Di Lullo, Elizabeth, Nene, Aishwarya, Wynshaw-Boris, Anthony, Kriegstein, Arnold R.
Published in Cell Stem Cell (2017)

The expression and activity of β-catenin in the thalamus and its projections to the cerebral cortex in the mouse embryo

by Pratt, Thomas, Davey, John W, Nowakowski, Tomasz J, Raasumaa, Casey, Rawlik, Konrad, McBride, Derek, Clinton, Michael, Mason, John O, Price, David J
Published 2012

The Expanding Cell Diversity of the Brain Vasculature

by Ross, Jayden M., Kim, Chang, Allen, Denise, Crouch, Elizabeth E., Narsinh, Kazim, Cooke, Daniel L., Abla, Adib A., Nowakowski, Tomasz J., Winkler, Ethan A.
Published in Front Physiol (2020)

Transcriptional fates of human-specific segmental duplications in brain

by Dougherty, Max L., Underwood, Jason G., Nelson, Bradley J., Tseng, Elizabeth, Munson, Katherine M., Penn, Osnat, Nowakowski, Tomasz J., Pollen, Alex A., Eichler, Evan E.
Published in Genome Res (2018)

Automated four-dimensional long term imaging enables single cell tracking within organotypic brain slices to study neurodevelopment and degeneration

by Linsley, Jeremy W., Tripathi, Atmiyata, Epstein, Irina, Schmunk, Galina, Mount, Elliot, Campioni, Matthew, Oza, Viral, Barch, Mariya, Javaherian, Ashkan, Nowakowski, Tomasz J., Samsi, Siddharth, Finkbeiner, Steven
Published in Commun Biol (2019)

Single‐cell sequencing maps gene expression to mutational phylogenies in PDGF‐ and EGF‐driven gliomas

by Müller, Sören, Liu, Siyuan John, Di Lullo, Elizabeth, Malatesta, Martina, Pollen, Alex A, Nowakowski, Tomasz J, Kohanbash, Gary, Aghi, Manish, Kriegstein, Arnold R, Lim, Daniel A, Diaz, Aaron
Published in Mol Syst Biol (2016)

A Chromatin Accessibility Atlas of the Developing Human Telencephalon

by Markenscoff-Papadimitriou, Eirene, Whalen, Sean, Przytycki, Pawel, Thomas, Reuben, Binyameen, Fadya, Nowakowski, Tomasz J., Kriegstein, Arnold R., Sanders, Stephan J., State, Matthew W., Pollard, Katherine S., Rubenstein, John L.
Published in Cell (2020)

Regulation of Cell-Type-Specific Transcriptomes by miRNA Networks During Human Brain Development

by Nowakowski, Tomasz J, Rani, Neha, Golkaram, Mahdi, Zhou, Hongjun R, Alvarado, Beatriz, Huch, Kylie, West, Jay A, Leyrat, Anne, Pollen, Alex A, Kriegstein, Arnold R, Petzold, Linda R, Kosik, Kenneth S.
Published in Nat Neurosci (2018)

Cell Stress in Cortical Organoids Impairs Molecular Subtype Specification

by Bhaduri, Aparna, Andrews, Madeline G., Mancia, Walter, Jung, Diane, Shin, David, Allen, Denise, Jung, Dana, Schmunk, Galina, Haeussler, Maximilian, Salma, Jahan, Pollen, Alex A., Nowakowski, Tomasz J., Kriegstein, Arnold R.
Published in Nature (2020)

Single-cell analysis of long non-coding RNAs in the developing human neocortex

by Liu, Siyuan John, Nowakowski, Tomasz J., Pollen, Alex A., Lui, Jan H., Horlbeck, Max A., Attenello, Frank J., He, Daniel, Weissman, Jonathan S., Kriegstein, Arnold R., Diaz, Aaron A., Lim, Daniel A.
Published in Genome Biol (2016)

Neuroserpin expression during human brain development and in adult brain revealed by immunohistochemistry and single cell RNA sequencing

by Adorjan, Istvan, Tyler, Teadora, Bhaduri, Aparna, Demharter, Samuel, Finszter, Cintia Klaudia, Bako, Maria, Sebok, Oliver Marcell, Nowakowski, Tomasz J., Khodosevich, Konstantin, Møllgård, Kjeld, Kriegstein, Arnold R., Shi, Lei, Hoerder‐Suabedissen, Anna, Ansorge, Olaf, Molnár, Zoltán
Published in J Anat (2019)