A Tool for Visualization and Analysis of Single-Cell RNA-Seq Data Based on Text Mining

by Gambardella, Gennaro, di Bernardo, Diego
Published in Front Genet (2019)

MEGA-V: detection of variant gene sets in patient cohorts

by Gambardella, Gennaro, Cereda, Matteo, Benedetti, Lorena, Ciccarelli, Francesca D
Published in Bioinformatics (2017)

Differential network analysis for the identification of condition-specific pathway activity and regulation

by Gambardella, Gennaro, Moretti, Maria Nicoletta, de Cegli, Rossella, Cardone, Luca, Peron, Adriano, di Bernardo, Diego
Published 2013

A reverse-engineering approach to dissect post-translational modulators of transcription factor’s activity from transcriptional data

by Gambardella, Gennaro, Peluso, Ivana, Montefusco, Sandro, Bansal, Mukesh, Medina, Diego L., Lawrence, Neil, di Bernardo, Diego
Published in BMC Bioinformatics (2015)

The impact of microRNAs on transcriptional heterogeneity and gene co-expression across single embryonic stem cells

by Gambardella, Gennaro, Carissimo, Annamaria, Chen, Amy, Cutillo, Luisa, Nowakowski, Tomasz J., di Bernardo, Diego, Blelloch, Robert
Published in Nat Commun (2017)

Fibroblast growth factor signalling controls nervous system patterning and pigment cell formation in Ciona intestinalis

by Racioppi, Claudia, Kamal, Ashwani K., Razy-Krajka, Florian, Gambardella, Gennaro, Zanetti, Laura, di Bernardo, Diego, Sanges, Remo, Christiaen, Lionel A., Ristoratore, Filomena
Published 2014

Reverse engineering a mouse embryonic stem cell-specific transcriptional network reveals a new modulator of neuronal differentiation

by De Cegli, Rossella, Iacobacci, Simona, Flore, Gemma, Gambardella, Gennaro, Mao, Lei, Cutillo, Luisa, Lauria, Mario, Klose, Joachim, Illingworth, Elizabeth, Banfi, Sandro, di Bernardo, Diego
Published 2013

Cancer of Unknown Primary (CUP): genetic evidence for a novel nosological entity? A case report

by Benvenuti, Silvia, Milan, Melissa, Geuna, Elena, Pisacane, Alberto, Senetta, Rebecca, Gambardella, Gennaro, Stella, Giulia M, Montemurro, Filippo, Sapino, Anna, Boccaccio, Carla, Comoglio, Paolo M
Published in EMBO Mol Med (2020)

Patients with genetically heterogeneous synchronous colorectal cancer carry rare damaging germline mutations in immune-related genes

by Cereda, Matteo, Gambardella, Gennaro, Benedetti, Lorena, Iannelli, Fabio, Patel, Dominic, Basso, Gianluca, Guerra, Rosalinda F., Mourikis, Thanos P., Puccio, Ignazio, Sinha, Shruti, Laghi, Luigi, Spencer, Jo, Rodriguez-Justo, Manuel, Ciccarelli, Francesca D.
Published in Nat Commun (2016)

GADD34 is a modulator of autophagy during starvation

by Gambardella, Gennaro, Staiano, Leopoldo, Moretti, Maria Nicoletta, De Cegli, Rossella, Fagnocchi, Luca, Di Tullio, Giuseppe, Polletti, Sara, Braccia, Clarissa, Armirotti, Andrea, Zippo, Alessio, Ballabio, Andrea, De Matteis, Maria Antonietta, di Bernardo, Diego
Published in Sci Adv (2020)

Cancer of unknown primary stem-like cells model multi-organ metastasis and unveil liability to MEK inhibition

by Verginelli, Federica, Pisacane, Alberto, Gambardella, Gennaro, D’Ambrosio, Antonio, Candiello, Ermes, Ferrio, Marco, Panero, Mara, Casorzo, Laura, Benvenuti, Silvia, Cascardi, Eliano, Senetta, Rebecca, Geuna, Elena, Ballabio, Andrea, Montemurro, Filippo, Sapino, Anna, Comoglio, Paolo M., Boccaccio, Carla
Published in Nat Commun (2021)