A New Twist on a Classic Paradigm: Illumination of a Genetic Switch in Vibrio cholerae Phage CTXΦ

by Nickels, Bryce E.
Published 2009

A new way to start: NanoRNA-mediated priming of transcription initiation

by Nickels, Bryce E.
Published 2012

NanoRNAs: a class of small RNAs that can prime transcription initiation in bacteria

by Nickels, Bryce E., Dove, Simon L.
Published 2011

CapZyme-Seq: A 5′-RNA-Seq Method for Differential Detection and Quantitation of NAD-Capped and Uncapped 5′-Triphosphate RNA

by Vvedenskaya, Irina O., Nickels, Bryce E.
Published in STAR Protoc (2020)

Chlamydia trachomatis protein GrgA activates transcription by contacting the nonconserved region of σ(66)

by Bao, Xiaofeng, Nickels, Bryce E., Fan, Huizhou
Published 2012

The bacteriophage T4 AsiA protein contacts the β-flap domain of RNA polymerase

by Yuan, Andy H., Nickels, Bryce E., Hochschild, Ann
Published 2009

Direct Detection of Abortive RNA Transcripts in Vivo

by Goldman, Seth R., Ebright, Richard H., Nickels, Bryce E.
Published 2009

Initial transcribed region sequences influence the composition and functional properties of the bacterial elongation complex

by Deighan, Padraig, Pukhrambam, Chirangini, Nickels, Bryce E., Hochschild, Ann
Published 2011

Preparation of cDNA libraries for high-throughput RNA sequencing analysis of RNA 5′ ends

by Vvedenskaya, Irina O., Goldman, Seth R., Nickels, Bryce E.
Published in Methods Mol Biol (2015)

RNA Capping by Transcription Initiation with Non-canonical Initiating Nucleotides (NCINs): Determination of Relative Efficiencies of Transcription Initiation with NCINs and NTPs

by Bird, Jeremy G., Nickels, Bryce E., Ebright, Richard H.
Published in Bio Protoc (2017)

Analysis of bacterial transcription by “massively systematic transcript end readout,” MASTER

by Vvedenskaya, Irina O., Goldman, Seth R., Nickels, Bryce E.
Published in Methods Enzymol (2018)

RNA-mediated destabilization of the σ(70) region 4/β flap interaction facilitates engagement of RNA polymerase by the Q antiterminator

by Nickels, Bryce E., Roberts, Christine W., Roberts, Jeffrey W., Hochschild, Ann
Published 2006

“NAD-capQ” detection and quantitation of NAD caps

by Grudzien-Nogalska, Ewa, Bird, Jeremy G., Nickels, Bryce E., Kiledjian, Megerditch
Published in RNA (2018)

The bacteriophage λ Q antiterminator protein contacts the β-flap domain of RNA polymerase

by Deighan, Padraig, Diez, Cristina Montero, Leibman, Mark, Hochschild, Ann, Nickels, Bryce E.
Published 2008

Utilization of variably spaced promoter-like elements by the bacterial RNA polymerase holoenzyme during early elongation

by Devi, Pukhrambam Grihanjali, Campbell, Elizabeth A., Darst, Seth A., Nickels, Bryce E.
Published 2010

The primary σ factor in Escherichia coli can access the transcription elongation complex from solution in vivo

by Goldman, Seth R, Nair, Nikhil U, Wells, Christopher D, Nickels, Bryce E, Hochschild, Ann
Published in eLife (2015)

The Bacteriophage T4 Transcription Activator MotA Interacts with the Far-C-Terminal Region of the σ(70) Subunit of Escherichia coli RNA Polymerase

by Pande, Suchira, Makela, Anna, Dove, Simon L., Nickels, Bryce E., Hochschild, Ann, Hinton, Deborah M.
Published 2002

CarD is an essential regulator of rRNA transcription required for Mycobacterium tuberculosis persistence

by Stallings, Christina L., Stephanou, Nicolas C., Chu, Linda, Hochschild, Ann, Nickels, Bryce E., Glickman, Michael S.
Published 2009

The mechanism of variability in transcription start site selection

by Yu, Libing, Winkelman, Jared T, Pukhrambam, Chirangini, Strick, Terence R, Nickels, Bryce E, Ebright, Richard H
Published in eLife (2017)

NanoRNAs prime transcription initiation in vivo

by Goldman, Seth R., Sharp, Josh S., Vvedenskaya, Irina O., Livny, Jonathan, Dove, Simon L., Nickels, Bryce E.
Published 2011