Whole genome sequencing analysis for cancer genomics and precision medicine

מאת Nakagawa, Hidewaki, Fujita, Masashi
הוצא לאור ב Cancer Sci (2018)

Analysis of APCL, a Brain‐specific Adenomatous Polyposis Coli Homologue, for Mutations and Expression in Brain Tumors

מאת Nakagawa, Hidewaki, Koyama, Kumiko, Monden, Morito, Nakamura, Yusuke
הוצא לאור ב Jpn J Cancer Res (1999)

CLCA2 as a p53-Inducible Senescence Mediator

מאת Tanikawa, Chizu, Nakagawa, Hidewaki, Furukawa, Yoichi, Nakamura, Yusuke, Matsuda, Koichi
יצא לאור 2012

Antibody-coupled monolithic silica microtips for highthroughput molecular profiling of circulating exosomes

מאת Ueda, Koji, Ishikawa, Nobuhisa, Tatsuguchi, Ayako, Saichi, Naomi, Fujii, Risa, Nakagawa, Hidewaki
יצא לאור 2014

Loss-of-function mutations in Zn-finger DNA-binding domain of HNF4A cause aberrant transcriptional regulation in liver cancer

מאת Taniguchi, Hiroaki, Fujimoto, Akihiro, Kono, Hidetoshi, Furuta, Mayuko, Fujita, Masashi, Nakagawa, Hidewaki
הוצא לאור ב Oncotarget (2018)

Prostate cancer genomics, biology, and risk assessment through genome‐wide association studies

מאת Nakagawa, Hidewaki, Akamatsu, Shusuke, Takata, Ryo, Takahashi, Atsushi, Kubo, Michiaki, Nakamura, Yusuke
הוצא לאור ב Cancer Sci (2012)

Systematic analysis of mutation distribution in three dimensional protein structures identifies cancer driver genes

מאת Fujimoto, Akihiro, Okada, Yukinori, Boroevich, Keith A., Tsunoda, Tatsuhiko, Taniguchi, Hiroaki, Nakagawa, Hidewaki
הוצא לאור ב Sci Rep (2016)

Frameshift Mutation of the STK11 Gene in a Sporadic Gastrointestinal Cancer with Microsatellite Instability

מאת Nakagawa, Hidewaki, Koyama, Kumiko, Nakamori, Shoji, Kameyama, Masao, Imaoka, Shingi, Monden, Morito, Nakamura, Yusuke
הוצא לאור ב Jpn J Cancer Res (1999)

ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data

מאת Hayashi, Shuto, Yamaguchi, Rui, Mizuno, Shinichi, Komura, Mitsuhiro, Miyano, Satoru, Nakagawa, Hidewaki, Imoto, Seiya
הוצא לאור ב BMC Genomics (2018)

Loss of imprinting of the insulin-like growth factor II gene occurs by biallelic methylation in a core region of H19-associated CTCF-binding sites in colorectal cancer

מאת Nakagawa, Hidewaki, Chadwick, Robert B., Peltomäki, Päivi, Plass, Christoph, Nakamura, Yusuke, de la Chapelle, Albert
יצא לאור 2001

Quantifying immune-based counterselection of somatic mutations

מאת Yang, Fan, Kim, Dae-Kyum, Nakagawa, Hidewaki, Hayashi, Shuto, Imoto, Seiya, Stein, Lincoln, Roth, Frederick P.
הוצא לאור ב PLoS Genet (2019)

ALPHLARD-NT: Bayesian Method for Human Leukocyte Antigen Genotyping and Mutation Calling through Simultaneous Analysis of Normal and Tumor Whole-Genome Sequence Data

מאת Hayashi, Shuto, Moriyama, Takuya, Yamaguchi, Rui, Mizuno, Shinichi, Komura, Mitsuhiro, Miyano, Satoru, Nakagawa, Hidewaki, Imoto, Seiya
הוצא לאור ב J Comput Biol (2019)

Identification of intermediate-sized deletions and inference of their impact on gene expression in a human population

מאת Wong, Jing Hao, Shigemizu, Daichi, Yoshii, Yukiko, Akiyama, Shintaro, Tanaka, Azusa, Nakagawa, Hidewaki, Narumiya, Shu, Fujimoto, Akihiro
הוצא לאור ב Genome Med (2019)

Neoantimon: a multifunctional R package for identification of tumor-specific neoantigens

מאת Hasegawa, Takanori, Hayashi, Shuto, Shimizu, Eigo, Mizuno, Shinichi, Niida, Atsushi, Yamaguchi, Rui, Miyano, Satoru, Nakagawa, Hidewaki, Imoto, Seiya
הוצא לאור ב Bioinformatics (2020)

Deglycosylation and label-free quantitative LC-MALDI MS applied to efficient serum biomarker discovery of lung cancer

מאת Toyama, Atsuhiko, Nakagawa, Hidewaki, Matsuda, Koichi, Ishikawa, Nobuhisa, Kohno, Nobuoki, Daigo, Yataro, Sato, Taka-Aki, Nakamura, Yusuke, Ueda, Koji
יצא לאור 2011

Identification of a p53-repressed gene module in breast cancer cells

מאת Miyamoto, Takafumi, Tanikawa, Chizu, Yodsurang, Varalee, Zhang, Yao-Zhong, Imoto, Seiya, Yamaguchi, Rui, Miyano, Satoru, Nakagawa, Hidewaki, Matsuda, Koichi
הוצא לאור ב Oncotarget (2017)

Proteomic profiling of HTLV-1 infected T-cells for the identification of potential biomarkers and therapeutic targets for HTLV-1 associated myelopathy/ tropical spastic paraparesis...

מאת Ueda, Koji, Ishihara, Makoto, Osawa, Ayako, Senkoji, Naomi, Araya, Natsumi, Sato, Tomoo, Utsunomiya, Atae, Yamano, Yoshihisa, Nakamura, Yusuke, Nakagawa, Hidewaki
יצא לאור 2011

Identification of HLA-A24-Restricted Novel T Cell Epitope Peptides Derived from P-Cadherin and Kinesin Family Member 20A

מאת Osawa, Ryuji, Tsunoda, Takuya, Yoshimura, Sachiko, Watanabe, Tomohisa, Miyazawa, Motoki, Tani, Masaji, Takeda, Kazuyoshi, Nakagawa, Hidewaki, Nakamura, Yusuke, Yamaue, Hiroki
יצא לאור 2012

Preapoptotic protease calpain-2 is frequently suppressed in adult T-cell leukemia

מאת Ishihara, Makoto, Araya, Natsumi, Sato, Tomoo, Tatsuguchi, Ayako, Saichi, Naomi, Utsunomiya, Atae, Nakamura, Yusuke, Nakagawa, Hidewaki, Yamano, Yoshihisa, Ueda, Koji
יצא לאור 2013

High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations

מאת Zhang, Yiqun, Chen, Fengju, Fonseca, Nuno A., He, Yao, Fujita, Masashi, Nakagawa, Hidewaki, Zhang, Zemin, Brazma, Alvis, Creighton, Chad J.
הוצא לאור ב Nat Commun (2020)