Gene Length and Proximity to Neighbors Affect Genome-Wide Expression Levels

le Chiaromonte, Francesca, Miller, Webb, Bouhassira,, Eric E.
Foilsithe 2003

CAGE: Combinatorial Analysis of Gene-Cluster Evolution

le Song, Giltae, Zhang, Louxin, Vinar, Tomas, Miller, Webb
Foilsithe 2010

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

le Addo-Quaye, Charles, Miller, Webb, Axtell, Michael J.
Foilsithe 2009

Reconstructing large regions of an ancestral mammalian genome in silico

le Blanchette, Mathieu, Green, Eric D., Miller, Webb, Haussler, David
Foilsithe 2004

SIMULTANEOUS HISTORY RECONSTRUCTION FOR COMPLEX GENE CLUSTERS IN MULTIPLE SPECIES

le Zhang, Yu, Song, Giltae, Hsu, Chih-Hao, Miller, Webb
Foilsithe 2009

Evaluation of methods for detecting conversion events in gene clusters

le Song, Giltae, Hsu, Chih-Hao, Riemer, Cathy, Miller, Webb
Foilsithe 2011

Identification of indels in next-generation sequencing data

le Ratan, Aakrosh, Olson, Thomas L, Loughran, Thomas P, Miller, Webb
Foilsithe in BMC Bioinformatics (2015)

EnteriX 2003: visualization tools for genome alignments of Enterobacteriaceae

le Florea, Liliana, McClelland, Michael, Riemer, Cathy, Schwartz, Scott, Miller, Webb
Foilsithe 2003

Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes

le Kent, W. James, Baertsch, Robert, Hinrichs, Angie, Miller, Webb, Haussler, David
Foilsithe 2003

A Computer Program for Aligning a cDNA Sequence with a Genomic DNA Sequence

le Florea, Liliana, Hartzell, George, Zhang, Zheng, Rubin, Gerald M., Miller, Webb
Foilsithe 1998

Phenotype Association Tools in Galaxy

le Giardine, Belinda M., Riemer, Cathy, Burhans, Richard, Ratan, Aakrosh, Miller, Webb
Foilsithe 2012

Analysis of the Quality and Utility of Random Shotgun Sequencing at Low Redundancies

le Bouck, John, Miller, Webb, Gorrell, James H., Muzny, Donna, Gibbs, Richard A.
Foilsithe 1998

zPicture: Dynamic Alignment and Visualization Tool for Analyzing Conservation Profiles

le Ovcharenko, Ivan, Loots, Gabriela G., Hardison, Ross C., Miller, Webb, Stubbs, Lisa
Foilsithe 2004

Calling SNPs without a reference sequence

le Ratan, Aakrosh, Zhang, Yu, Hayes, Vanessa M, Schuster, Stephan C, Miller, Webb
Foilsithe 2010

Genomic Sequence Analysis of the Mouse Naip Gene Array

le Endrizzi, Matthew G., Hadinoto, Vey, Growney, Joseph D., Miller, Webb, Dietrich, William F.
Foilsithe 2000

Using genomic data to unravel the root of the placental mammal phylogeny

le Murphy, William J., Pringle, Thomas H., Crider, Tess A., Springer, Mark S., Miller, Webb
Foilsithe 2007

Evolutionary History Reconstruction for Mammalian Complex Gene Clusters

le Zhang, Yu, Song, Giltae, Vinař, Tomáš, Green, Eric D., Siepel, Adam, Miller, Webb
Foilsithe 2009

An Effective Method for Detecting Gene Conversion Events in Whole Genomes

le Hsu, Chih-Hao, Zhang, Yu, Hardison, Ross C., Green, Eric D., Miller, Webb
Foilsithe 2010

Comparison of Sequencing Platforms for Single Nucleotide Variant Calls in a Human Sample

le Ratan, Aakrosh, Miller, Webb, Guillory, Joseph, Stinson, Jeremy, Seshagiri, Somasekar, Schuster, Stephan C.
Foilsithe 2013

Association between divergence and interspersed repeats in mammalian noncoding genomic DNA

le Chiaromonte, Francesca, Yang, Shan, Elnitski, Laura, Yap, Von Bing, Miller, Webb, Hardison, Ross C.
Foilsithe 2001