PHYLOSEQ: A BIOCONDUCTOR PACKAGE FOR HANDLING AND ANALYSIS OF HIGH-THROUGHPUT PHYLOGENETIC SEQUENCE DATA

Yazar: McMURDIE, PAUL J., HOLMES, SUSAN
Baskı/Yayın Bilgisi 2012

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Yazar: McMurdie, Paul J., Holmes, Susan
Baskı/Yayın Bilgisi 2013

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

Yazar: McMurdie, Paul J., Holmes, Susan
Baskı/Yayın Bilgisi 2014

Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking

Yazar: McMurdie, Paul J., Holmes, Susan
Yayımlandı Bioinformatics (2015)

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

Yazar: Callahan, Benjamin J, McMurdie, Paul J, Holmes, Susan P
Yayımlandı ISME J (2017)

Unusual Codon Bias in Vinyl Chloride Reductase Genes of Dehalococcoides Species

Yazar: McMurdie, Paul J., Behrens, Sebastian F., Holmes, Susan, Spormann, Alfred M.
Baskı/Yayın Bilgisi 2007

Site-Specific Mobilization of Vinyl Chloride Respiration Islands by a Mechanism Common in Dehalococcoides

Yazar: McMurdie, Paul J, Hug, Laura A, Edwards, Elizabeth A, Holmes, Susan, Spormann, Alfred M
Baskı/Yayın Bilgisi 2011

Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses

Yazar: Callahan, Ben J., Sankaran, Kris, Fukuyama, Julia A., McMurdie, Paul J., Holmes, Susan P.
Yayımlandı F1000Res (2016)

Monitoring Abundance and Expression of “Dehalococcoides” Species Chloroethene-Reductive Dehalogenases in a Tetrachloroethene-Dechlorinating Flow Column

Yazar: Behrens, Sebastian, Azizian, Mohammad F., McMurdie, Paul J., Sabalowsky, Andrew, Dolan, Mark E., Semprini, Lew, Spormann, Alfred M.
Baskı/Yayın Bilgisi 2008

DADA2: High resolution sample inference from Illumina amplicon data

Yazar: Callahan, Benjamin J, McMurdie, Paul J, Rosen, Michael J, Han, Andrew W, Johnson, Amy Jo A, Holmes, Susan P
Yayımlandı Nat Methods (2016)

Butyrate-producing human gut symbiont, Clostridium butyricum, and its role in health and disease

Yazar: Stoeva, Magdalena K., Garcia-So, Jeewon, Justice, Nicholas, Myers, Julia, Tyagi, Surabhi, Nemchek, Madeleine, McMurdie, Paul J., Kolterman, Orville, Eid, John
Yayımlandı Gut Microbes (2021)

Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides

Yazar: McMurdie, Paul J., Behrens, Sebastian F., Müller, Jochen A., Göke, Jonathan, Ritalahti, Kirsti M., Wagner, Ryan, Goltsman, Eugene, Lapidus, Alla, Holmes, Susan, Löffler, Frank E., Spormann, Alfred M.
Baskı/Yayın Bilgisi 2009

Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay

Yazar: Burow, Luke C, Woebken, Dagmar, Bebout, Brad M, McMurdie, Paul J, Singer, Steven W, Pett-Ridge, Jennifer, Prufert-Bebout, Leslie, Spormann, Alfred M, Weber, Peter K, Hoehler, Tori M
Baskı/Yayın Bilgisi 2012

Temporal and spatial variation of the human microbiota during pregnancy

Yazar: DiGiulio, Daniel B., Callahan, Benjamin J., McMurdie, Paul J., Costello, Elizabeth K., Lyell, Deirdre J., Robaczewska, Anna, Sun, Christine L., Goltsman, Daniela S. A., Wong, Ronald J., Shaw, Gary, Stevenson, David K., Holmes, Susan P., Relman, David A.
Yayımlandı Proc Natl Acad Sci U S A (2015)

Advancing our understanding of the human microbiome using QIIME

Yazar: Navas-Molina, José A., Peralta-Sánchez, Juan M., González, Antonio, McMurdie, Paul J., Vázquez-Baeza, Yoshiki, Xu, Zhenjiang, Ursell, Luke K., Lauber, Christian, Zhou, Hongwei, Song, Se Jin, Huntley, James, Ackermann, Gail L., Berg-Lyons, Donna, Holmes, Susan, Caporaso, J. Gregory, Knight, Rob
Yayımlandı Methods Enzymol (2013)