PHYLOSEQ: A BIOCONDUCTOR PACKAGE FOR HANDLING AND ANALYSIS OF HIGH-THROUGHPUT PHYLOGENETIC SEQUENCE DATA

nork McMURDIE, PAUL J., HOLMES, SUSAN
Argitaratua 2012

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

nork McMurdie, Paul J., Holmes, Susan
Argitaratua 2013

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

nork McMurdie, Paul J., Holmes, Susan
Argitaratua 2014

Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking

nork McMurdie, Paul J., Holmes, Susan
Argitaratua izan da Bioinformatics (2015)

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

nork Callahan, Benjamin J, McMurdie, Paul J, Holmes, Susan P
Argitaratua izan da ISME J (2017)

Unusual Codon Bias in Vinyl Chloride Reductase Genes of Dehalococcoides Species

nork McMurdie, Paul J., Behrens, Sebastian F., Holmes, Susan, Spormann, Alfred M.
Argitaratua 2007

Site-Specific Mobilization of Vinyl Chloride Respiration Islands by a Mechanism Common in Dehalococcoides

nork McMurdie, Paul J, Hug, Laura A, Edwards, Elizabeth A, Holmes, Susan, Spormann, Alfred M
Argitaratua 2011

Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses

nork Callahan, Ben J., Sankaran, Kris, Fukuyama, Julia A., McMurdie, Paul J., Holmes, Susan P.
Argitaratua izan da F1000Res (2016)

Monitoring Abundance and Expression of “Dehalococcoides” Species Chloroethene-Reductive Dehalogenases in a Tetrachloroethene-Dechlorinating Flow Column

nork Behrens, Sebastian, Azizian, Mohammad F., McMurdie, Paul J., Sabalowsky, Andrew, Dolan, Mark E., Semprini, Lew, Spormann, Alfred M.
Argitaratua 2008

DADA2: High resolution sample inference from Illumina amplicon data

nork Callahan, Benjamin J, McMurdie, Paul J, Rosen, Michael J, Han, Andrew W, Johnson, Amy Jo A, Holmes, Susan P
Argitaratua izan da Nat Methods (2016)

Butyrate-producing human gut symbiont, Clostridium butyricum, and its role in health and disease

nork Stoeva, Magdalena K., Garcia-So, Jeewon, Justice, Nicholas, Myers, Julia, Tyagi, Surabhi, Nemchek, Madeleine, McMurdie, Paul J., Kolterman, Orville, Eid, John
Argitaratua izan da Gut Microbes (2021)

Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides

nork McMurdie, Paul J., Behrens, Sebastian F., Müller, Jochen A., Göke, Jonathan, Ritalahti, Kirsti M., Wagner, Ryan, Goltsman, Eugene, Lapidus, Alla, Holmes, Susan, Löffler, Frank E., Spormann, Alfred M.
Argitaratua 2009

Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay

nork Burow, Luke C, Woebken, Dagmar, Bebout, Brad M, McMurdie, Paul J, Singer, Steven W, Pett-Ridge, Jennifer, Prufert-Bebout, Leslie, Spormann, Alfred M, Weber, Peter K, Hoehler, Tori M
Argitaratua 2012

Temporal and spatial variation of the human microbiota during pregnancy

nork DiGiulio, Daniel B., Callahan, Benjamin J., McMurdie, Paul J., Costello, Elizabeth K., Lyell, Deirdre J., Robaczewska, Anna, Sun, Christine L., Goltsman, Daniela S. A., Wong, Ronald J., Shaw, Gary, Stevenson, David K., Holmes, Susan P., Relman, David A.
Argitaratua izan da Proc Natl Acad Sci U S A (2015)

Advancing our understanding of the human microbiome using QIIME

nork Navas-Molina, José A., Peralta-Sánchez, Juan M., González, Antonio, McMurdie, Paul J., Vázquez-Baeza, Yoshiki, Xu, Zhenjiang, Ursell, Luke K., Lauber, Christian, Zhou, Hongwei, Song, Se Jin, Huntley, James, Ackermann, Gail L., Berg-Lyons, Donna, Holmes, Susan, Caporaso, J. Gregory, Knight, Rob
Argitaratua izan da Methods Enzymol (2013)