ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data

door Baskin, Elizabeth, Farouni, Rick, Mathé, Ewy A
Gepubliceerd in Bioinformatics (2017)

ALTRE: workflow for defining ALTered regulatory elements using chromatin accessibility data

door Baskin, Elizabeth, Farouni, Rick, Mathé, Ewy A
Gepubliceerd in Bioinformatics (2017)

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements

door Eicher, Tara, Chan, Jany, Luu, Han, Machiraju, Raghu, Mathé, Ewy A.
Gepubliceerd in BMC Bioinformatics (2021)

Elucidation of Biological Networks Across Complex Diseases Using Single-Cell Omics

door Li, Yang, Ma, Anjun, Mathé, Ewy A., Liu, Bingqiang, Li, Lang, Ma, Qin
Gepubliceerd in Trends Genet (2020)

RaMP: A Comprehensive Relational Database of Metabolomics Pathways for Pathway Enrichment Analysis of Genes and Metabolites

door Zhang, Bofei, Hu, Senyang, Baskin, Elizabeth, Patt, Andrew, Siddiqui, Jalal K., Mathé, Ewy A.
Gepubliceerd in Metabolites (2018)

Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources

door Eicher, Tara, Kinnebrew, Garrett, Patt, Andrew, Spencer, Kyle, Ying, Kevin, Ma, Qin, Machiraju, Raghu, Mathé, Ewy A.
Gepubliceerd in Metabolites (2020)

Identification of transcription factor co-regulators that drive prostate cancer progression

door Siddappa, Manjunath, Wani, Sajad A., Long, Mark D., Leach, Damien A., Mathé, Ewy A., Bevan, Charlotte L., Campbell, Moray J.
Gepubliceerd in Sci Rep (2020)

IntLIM: integration using linear models of metabolomics and gene expression data

door Siddiqui, Jalal K., Baskin, Elizabeth, Liu, Mingrui, Cantemir-Stone, Carmen Z., Zhang, Bofei, Bonneville, Russell, McElroy, Joseph P., Coombes, Kevin R., Mathé, Ewy A.
Gepubliceerd in BMC Bioinformatics (2018)

MDM2-Dependent Rewiring of Metabolomic and Lipidomic Profiles in Dedifferentiated Liposarcoma Models

door Patt, Andrew, Demoret, Bryce, Stets, Colin, Bill, Kate-Lynn, Smith, Philip, Vijay, Anitha, Patterson, Andrew, Hays, John, Hoang, Mindy, Chen, James L., Mathé, Ewy A.
Gepubliceerd in Cancers (Basel) (2020)

The association of microRNA expression with prognosis and progression in early stage, non small cell lung adenocarcinoma: a retrospective analysis of three cohorts

door Saito, Motonobu, Schetter, Aaron J., Mollerup, Steen, Kohno, Takashi, Skaug, Vidar, Bowman, Elise D., Mathé, Ewy A., Takenoshita, Seiichi, Yokota, Jun, Haugen, Aage, Harris, Curtis C.
Gepubliceerd in 2011

Association of inflammation-related and microRNA gene expression with cancer specific mortality of colon adenocarcinoma

door Schetter, Aaron J., Nguyen, Giang Huong, Bowman, Elise D., Mathé, Ewy A., Yuen, Siu Tsan, Hawkes, Jason E., Croce, Carlo M., Leung, Suet Yi, Harris, Curtis C.
Gepubliceerd in 2009

Effects of Electronic Cigarette Constituents on the Human Lung: A Pilot Clinical Trial

door Song, Min-Ae, Reisinger, Sarah A., Freudenheim, Jo L., Brasky, Theodore M., Mathé, Ewy A., McElroy, Joseph P., Nickerson, Quentin A., Weng, Daniel Y., Wewers, Mark D., Shields, Peter G.
Gepubliceerd in Cancer Prev Res (Phila) (2019)

MiR-21 is an EGFR-regulated anti-apoptotic factor in lung cancer in never-smokers

door Seike, Masahiro, Goto, Akiteru, Okano, Tetsuya, Bowman, Elise D., Schetter, Aaron J., Horikawa, Izumi, Mathe, Ewy A., Jen, Jin, Yang, Ping, Sugimura, Haruhiko, Gemma, Akihiko, Kudoh, Shoji, Croce, Carlo M., Harris, Curtis C.
Gepubliceerd in 2009

microRNA and inflammatory gene expression as prognostic marker for overall survival in esophageal squamous cell carcinoma

door Zhao, Yiqiang, Schetter, Aaron J., Yang, Geoffrey B., Nguyen, Giang, Mathé, Ewy A., Li, Peng, Cai, Hong, Yu, Lei, Liu, Fangfang, Hang, Dong, Yang, Haijun, Wang, Xin Wei, Ke, Yang, Harris, Curtis C.
Gepubliceerd in Int J Cancer (2012)

Urinary Metabolite Risk Biomarkers of Lung Cancer: A Prospective Cohort Study

door Haznadar, Majda, Cai, Qiuyin, Krausz, Kristopher W., Bowman, Elise D., Margono, Ezra, Noro, Rintaro, Thompson, Matthew D., Mathé, Ewy A., Munro, Heather M., Steinwandel, Mark D., Gonzalez, Frank J., Blot, William J., Harris, Curtis C.
Gepubliceerd in Cancer Epidemiol Biomarkers Prev (2016)

Biomarkers of Exposure and Effect in the Lungs of Smokers, Non-Smokers and Electronic Cigarette Users

door Song, Min-Ae, Freudenheim, Jo L., Brasky, Theodore M., Mathe, Ewy A., McElroy, Joseph P., Nickerson, Quentin A., Reisinger, Sarah A., Smiraglia, Dominic J., Weng, Daniel Y., Ying, Kevin L., Wewers, Mark D., Shields, Peter G.
Gepubliceerd in Cancer Epidemiol Biomarkers Prev (2019)

Inflammatory and microRNA Gene Expression as Prognostic Classifiers of Barrett's Associated Esophageal Adenocarcinoma

door Nguyen, Giang Huong, Schetter, Aaron J., Chou, David B., Bowman, Elise D., Zhao, Ronghua, Hawkes, Jason E., Mathe, Ewy A., Kumamoto, Kensuke, Zhao, Yiqiang, Budhu, Anuradha, Hagiwara, Nobutoshi, Wang, Xin Wei, Miyashita, Masao, Casson, Alan G., Harris, Curtis C.
Gepubliceerd in 2010

Non-invasive urinary metabolomic profiling identifies diagnostic and prognostic markers in lung cancer

door Mathé, Ewy A., Patterson, Andrew D., Haznadar, Majda, Manna, Soumen K., Krausz, Kristopher W., Bowman, Elise D., Shields, Peter G., Idle, Jeffrey R., Smith, Philip B., Anami, Katsuhiro, Kazandjian, Dickran G., Hatzakis, Emmanuel, Gonzalez, Frank J., Harris, Curtis C.
Gepubliceerd in 2014

p53 isoforms, Δ133p53 and p53β, are endogenous regulators of replicative cellular senescence

door Fujita, Kaori, Mondal, Abdul M., Horikawa, Izumi, Nguyen, Giang H., Kumamoto, Kensuke, Sohn, Jane J., Bowman, Elise D., Mathe, Ewy A., Schetter, Aaron J., Pine, Sharon R., Ji, Helen, Vojtesek, Borivoj, Bourdon, Jean-Christophe, Lane, David P., Harris, Curtis C.
Gepubliceerd in 2009

A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research

door Zahoránszky-Kőhalmi, Gergely, Siramshetty, Vishal B., Kumar, Praveen, Gurumurthy, Manideep, Grillo, Busola, Mathew, Biju, Metaxatos, Dimitrios, Backus, Mark, Mierzwa, Tim, Simon, Reid, Grishagin, Ivan, Brovold, Laura, Mathé, Ewy A., Hall, Matthew D., Michael, Samuel G., Godfrey, Alexander G., Mestres, Jordi, Jensen, Lars J., Oprea, Tudor I.
Gepubliceerd in bioRxiv (2020)