ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data

Por Baskin, Elizabeth, Farouni, Rick, Mathé, Ewy A
Publicado no Bioinformatics (2017)

ALTRE: workflow for defining ALTered regulatory elements using chromatin accessibility data

Por Baskin, Elizabeth, Farouni, Rick, Mathé, Ewy A
Publicado no Bioinformatics (2017)

Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements

Por Pinello, Luca, Farouni, Rick, Yuan, Guo-Cheng
Publicado no Bioinformatics (2018)

AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing

Por Clement, Kendell, Farouni, Rick, Bauer, Daniel E, Pinello, Luca
Publicado no Bioinformatics (2018)

Accurate and rapid analysis of genome editing data from nucleases and base editors with CRISPResso2

Por Clement, Kendell, Rees, Holly, Canver, Matthew C., Gehrke, Jason M., Farouni, Rick, Hsu, Jonathan Y, Cole, Mitchel A., Liu, David R., Joung, J. Keith, Bauer, Daniel E., Pinello, Luca
Publicado no Nat Biotechnol (2019)

CRISPR-SURF: discovering regulatory elements by deconvolution of CRISPR tiling screen data

Por Hsu, Jonathan Y., Fulco, Charles P., Cole, Mitchel A., Canver, Matthew C., Pellin, Danilo, Sher, Falak, Farouni, Rick, Clement, Kendell, Guo, Jimmy A., Biasco, Luca, Orkin, Stuart H., Engreitz, Jesse M., Lander, Eric S., Joung, J. Keith, Bauer, Daniel E., Pinello, Luca
Publicado no Nat Methods (2018)

TAF5L and TAF6L maintain self-renewal of embryonic stem cells via the MYC regulatory network

Por Seruggia, Davide, Oti, Martin, Tripathi, Pratibha, Canver, Matthew C., LeBlanc, Lucy, Di Giammartino, Dafne C., Bullen, Michael, Nefzger, Christian M., Yang Sun, Yu Bo, Farouni, Rick, Polo, Jose M., Pinello, Luca, Apostolou, Effie, Kim, Jonghwan, Orkin, Stuart H., Das, Partha Pratim
Publicado no Mol Cell (2019)