ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data

Por Baskin, Elizabeth, Farouni, Rick, Mathé, Ewy A
Publicado no Bioinformatics (2017)

ALTRE: workflow for defining ALTered regulatory elements using chromatin accessibility data

Por Baskin, Elizabeth, Farouni, Rick, Mathé, Ewy A
Publicado no Bioinformatics (2017)

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements

Por Eicher, Tara, Chan, Jany, Luu, Han, Machiraju, Raghu, Mathé, Ewy A.
Publicado no BMC Bioinformatics (2021)

Elucidation of Biological Networks Across Complex Diseases Using Single-Cell Omics

Por Li, Yang, Ma, Anjun, Mathé, Ewy A., Liu, Bingqiang, Li, Lang, Ma, Qin
Publicado no Trends Genet (2020)

RaMP: A Comprehensive Relational Database of Metabolomics Pathways for Pathway Enrichment Analysis of Genes and Metabolites

Por Zhang, Bofei, Hu, Senyang, Baskin, Elizabeth, Patt, Andrew, Siddiqui, Jalal K., Mathé, Ewy A.
Publicado no Metabolites (2018)

Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources

Por Eicher, Tara, Kinnebrew, Garrett, Patt, Andrew, Spencer, Kyle, Ying, Kevin, Ma, Qin, Machiraju, Raghu, Mathé, Ewy A.
Publicado no Metabolites (2020)

Identification of transcription factor co-regulators that drive prostate cancer progression

Por Siddappa, Manjunath, Wani, Sajad A., Long, Mark D., Leach, Damien A., Mathé, Ewy A., Bevan, Charlotte L., Campbell, Moray J.
Publicado no Sci Rep (2020)

IntLIM: integration using linear models of metabolomics and gene expression data

Por Siddiqui, Jalal K., Baskin, Elizabeth, Liu, Mingrui, Cantemir-Stone, Carmen Z., Zhang, Bofei, Bonneville, Russell, McElroy, Joseph P., Coombes, Kevin R., Mathé, Ewy A.
Publicado no BMC Bioinformatics (2018)

MDM2-Dependent Rewiring of Metabolomic and Lipidomic Profiles in Dedifferentiated Liposarcoma Models

Por Patt, Andrew, Demoret, Bryce, Stets, Colin, Bill, Kate-Lynn, Smith, Philip, Vijay, Anitha, Patterson, Andrew, Hays, John, Hoang, Mindy, Chen, James L., Mathé, Ewy A.
Publicado no Cancers (Basel) (2020)

The association of microRNA expression with prognosis and progression in early stage, non small cell lung adenocarcinoma: a retrospective analysis of three cohorts

Por Saito, Motonobu, Schetter, Aaron J., Mollerup, Steen, Kohno, Takashi, Skaug, Vidar, Bowman, Elise D., Mathé, Ewy A., Takenoshita, Seiichi, Yokota, Jun, Haugen, Aage, Harris, Curtis C.
Publicado em 2011

Association of inflammation-related and microRNA gene expression with cancer specific mortality of colon adenocarcinoma

Por Schetter, Aaron J., Nguyen, Giang Huong, Bowman, Elise D., Mathé, Ewy A., Yuen, Siu Tsan, Hawkes, Jason E., Croce, Carlo M., Leung, Suet Yi, Harris, Curtis C.
Publicado em 2009

Effects of Electronic Cigarette Constituents on the Human Lung: A Pilot Clinical Trial

Por Song, Min-Ae, Reisinger, Sarah A., Freudenheim, Jo L., Brasky, Theodore M., Mathé, Ewy A., McElroy, Joseph P., Nickerson, Quentin A., Weng, Daniel Y., Wewers, Mark D., Shields, Peter G.
Publicado no Cancer Prev Res (Phila) (2019)

MiR-21 is an EGFR-regulated anti-apoptotic factor in lung cancer in never-smokers

Por Seike, Masahiro, Goto, Akiteru, Okano, Tetsuya, Bowman, Elise D., Schetter, Aaron J., Horikawa, Izumi, Mathe, Ewy A., Jen, Jin, Yang, Ping, Sugimura, Haruhiko, Gemma, Akihiko, Kudoh, Shoji, Croce, Carlo M., Harris, Curtis C.
Publicado em 2009

microRNA and inflammatory gene expression as prognostic marker for overall survival in esophageal squamous cell carcinoma

Por Zhao, Yiqiang, Schetter, Aaron J., Yang, Geoffrey B., Nguyen, Giang, Mathé, Ewy A., Li, Peng, Cai, Hong, Yu, Lei, Liu, Fangfang, Hang, Dong, Yang, Haijun, Wang, Xin Wei, Ke, Yang, Harris, Curtis C.
Publicado no Int J Cancer (2012)

Urinary Metabolite Risk Biomarkers of Lung Cancer: A Prospective Cohort Study

Por Haznadar, Majda, Cai, Qiuyin, Krausz, Kristopher W., Bowman, Elise D., Margono, Ezra, Noro, Rintaro, Thompson, Matthew D., Mathé, Ewy A., Munro, Heather M., Steinwandel, Mark D., Gonzalez, Frank J., Blot, William J., Harris, Curtis C.
Publicado no Cancer Epidemiol Biomarkers Prev (2016)

Biomarkers of Exposure and Effect in the Lungs of Smokers, Non-Smokers and Electronic Cigarette Users

Por Song, Min-Ae, Freudenheim, Jo L., Brasky, Theodore M., Mathe, Ewy A., McElroy, Joseph P., Nickerson, Quentin A., Reisinger, Sarah A., Smiraglia, Dominic J., Weng, Daniel Y., Ying, Kevin L., Wewers, Mark D., Shields, Peter G.
Publicado no Cancer Epidemiol Biomarkers Prev (2019)

Inflammatory and microRNA Gene Expression as Prognostic Classifiers of Barrett's Associated Esophageal Adenocarcinoma

Por Nguyen, Giang Huong, Schetter, Aaron J., Chou, David B., Bowman, Elise D., Zhao, Ronghua, Hawkes, Jason E., Mathe, Ewy A., Kumamoto, Kensuke, Zhao, Yiqiang, Budhu, Anuradha, Hagiwara, Nobutoshi, Wang, Xin Wei, Miyashita, Masao, Casson, Alan G., Harris, Curtis C.
Publicado em 2010

Non-invasive urinary metabolomic profiling identifies diagnostic and prognostic markers in lung cancer

Por Mathé, Ewy A., Patterson, Andrew D., Haznadar, Majda, Manna, Soumen K., Krausz, Kristopher W., Bowman, Elise D., Shields, Peter G., Idle, Jeffrey R., Smith, Philip B., Anami, Katsuhiro, Kazandjian, Dickran G., Hatzakis, Emmanuel, Gonzalez, Frank J., Harris, Curtis C.
Publicado em 2014

p53 isoforms, Δ133p53 and p53β, are endogenous regulators of replicative cellular senescence

Por Fujita, Kaori, Mondal, Abdul M., Horikawa, Izumi, Nguyen, Giang H., Kumamoto, Kensuke, Sohn, Jane J., Bowman, Elise D., Mathe, Ewy A., Schetter, Aaron J., Pine, Sharon R., Ji, Helen, Vojtesek, Borivoj, Bourdon, Jean-Christophe, Lane, David P., Harris, Curtis C.
Publicado em 2009

A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research

Por Zahoránszky-Kőhalmi, Gergely, Siramshetty, Vishal B., Kumar, Praveen, Gurumurthy, Manideep, Grillo, Busola, Mathew, Biju, Metaxatos, Dimitrios, Backus, Mark, Mierzwa, Tim, Simon, Reid, Grishagin, Ivan, Brovold, Laura, Mathé, Ewy A., Hall, Matthew D., Michael, Samuel G., Godfrey, Alexander G., Mestres, Jordi, Jensen, Lars J., Oprea, Tudor I.
Publicado no bioRxiv (2020)