Route of SARS-CoV-2 in sewerage and wastewater treatment plants: dilution, decay, removal, and environmental transmission

od Foladori, Paola, Cutrupi, Francesca, Cadonna, Maria, Manara, Serena, Maestrini, Federica
izdano v Environmental and Health Management of Novel Coronavirus Disease (COVID-19 ) (2021)

SARS-CoV-2 from faeces to wastewater treatment: What do we know? A review

od Foladori, Paola, Cutrupi, Francesca, Segata, Nicola, Manara, Serena, Pinto, Federica, Malpei, Francesca, Bruni, Laura, La Rosa, Giuseppina
izdano v Sci Total Environ (2020)

Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

od Asnicar, Francesco, Manara, Serena, Zolfo, Moreno, Truong, Duy Tin, Scholz, Matthias, Armanini, Federica, Ferretti, Pamela, Gorfer, Valentina, Pedrotti, Anna, Tett, Adrian, Segata, Nicola
izdano v mSystems (2017)

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

od Manara, Serena, Asnicar, Francesco, Beghini, Francesco, Bazzani, Davide, Cumbo, Fabio, Zolfo, Moreno, Nigro, Eleonora, Karcher, Nicolai, Manghi, Paolo, Metzger, Marisa Isabell, Pasolli, Edoardo, Segata, Nicola
izdano v Genome Biol (2019)

Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital

od Manara, Serena, Pasolli, Edoardo, Dolce, Daniela, Ravenni, Novella, Campana, Silvia, Armanini, Federica, Asnicar, Francesco, Mengoni, Alessio, Galli, Luisa, Montagnani, Carlotta, Venturini, Elisabetta, Rota-Stabelli, Omar, Grandi, Guido, Taccetti, Giovanni, Segata, Nicola
izdano v Genome Med (2018)

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

od Asnicar, Francesco, Thomas, Andrew Maltez, Beghini, Francesco, Mengoni, Claudia, Manara, Serena, Manghi, Paolo, Zhu, Qiyun, Bolzan, Mattia, Cumbo, Fabio, May, Uyen, Sanders, Jon G., Zolfo, Moreno, Kopylova, Evguenia, Pasolli, Edoardo, Knight, Rob, Mirarab, Siavash, Huttenhower, Curtis, Segata, Nicola
izdano v Nat Commun (2020)

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

od Pasolli, Edoardo, Asnicar, Francesco, Manara, Serena, Zolfo, Moreno, Karcher, Nicolai, Armanini, Federica, Beghini, Francesco, Manghi, Paolo, Tett, Adrian, Ghensi, Paolo, Collado, Maria Carmen, Rice, Benjamin L., DuLong, Casey, Morgan, Xochitl C., Golden, Christopher D., Quince, Christopher, Huttenhower, Curtis, Segata, Nicola
izdano v Cell (2019)

Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly

od Karcher, Nicolai, Nigro, Eleonora, Punčochář, Michal, Blanco-Míguez, Aitor, Ciciani, Matteo, Manghi, Paolo, Zolfo, Moreno, Cumbo, Fabio, Manara, Serena, Golzato, Davide, Cereseto, Anna, Arumugam, Manimozhiyan, Bui, Thi Phuong Nam, Tytgat, Hanne L. P., Valles-Colomer, Mireia, de Vos, Willem M., Segata, Nicola
izdano v Genome Biol (2021)

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

od Karcher, Nicolai, Pasolli, Edoardo, Asnicar, Francesco, Huang, Kun D., Tett, Adrian, Manara, Serena, Armanini, Federica, Bain, Debbie, Duncan, Sylvia H., Louis, Petra, Zolfo, Moreno, Manghi, Paolo, Valles-Colomer, Mireia, Raffaetà, Roberta, Rota-Stabelli, Omar, Collado, Maria Carmen, Zeller, Georg, Falush, Daniel, Maixner, Frank, Walker, Alan W., Huttenhower, Curtis, Segata, Nicola
izdano v Genome Biol (2020)

Methicillin-resistant Staphylococcus aureus eradication in cystic fibrosis patients: A randomized multicenter study

od Dolce, Daniela, Neri, Stella, Grisotto, Laura, Campana, Silvia, Ravenni, Novella, Miselli, Francesca, Camera, Erica, Zavataro, Lucia, Braggion, Cesare, Fiscarelli, Ersilia V., Lucidi, Vincenzina, Cariani, Lisa, Girelli, Daniela, Faelli, Nadia, Colombo, Carla, Lucanto, Cristina, Lombardo, Mariangela, Magazzù, Giuseppe, Tosco, Antonella, Raia, Valeria, Manara, Serena, Pasolli, Edoardo, Armanini, Federica, Segata, Nicola, Biggeri, Annibale, Taccetti, Giovanni
izdano v PLoS One (2019)

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

od Ferretti, Pamela, Pasolli, Edoardo, Tett, Adrian, Asnicar, Francesco, Gorfer, Valentina, Fedi, Sabina, Armanini, Federica, Truong, Duy Tin, Manara, Serena, Zolfo, Moreno, Beghini, Francesco, Bertorelli, Roberto, De Sanctis, Veronica, Bariletti, Ilaria, Canto, Rosarita, Clementi, Rosanna, Cologna, Marina, Crifò, Tiziana, Cusumano, Giuseppina, Gottardi, Stefania, Innamorati, Claudia, Masè, Caterina, Postai, Daniela, Savoi, Daniela, Duranti, Sabrina, Lugli, Gabriele Andrea, Mancabelli, Leonardo, Turroni, Francesca, Ferrario, Chiara, Milani, Christian, Mangifesta, Marta, Anzalone, Rosaria, Viappiani, Alice, Yassour, Moran, Vlamakis, Hera, Xavier, Ramnik, Collado, Carmen Maria, Koren, Omry, Tateo, Saverio, Soffiati, Massimo, Pedrotti, Anna, Ventura, Marco, Huttenhower, Curtis, Bork, Peer, Segata, Nicola
izdano v Cell Host Microbe (2018)