Draft Genome Sequence of the Planktic Cyanobacterium Tychonema bourrellyi, Isolated from Alpine Lentic Freshwater

by Pinto, Federica, Tett, Adrian, Armanini, Federica, Asnicar, Francesco, Boscaini, Adriano, Pasolli, Edoardo, Zolfo, Moreno, Donati, Claudio, Salmaso, Nico, Segata, Nicola
Published in Genome Announc (2017)

Draft Genome Sequences of Novel Pseudomonas, Flavobacterium, and Sediminibacterium Species Strains from a Freshwater Ecosystem

by Pinto, Federica, Tett, Adrian, Armanini, Federica, Asnicar, Francesco, Boscaini, Adriano, Pasolli, Edoardo, Zolfo, Moreno, Donati, Claudio, Salmaso, Nico, Segata, Nicola
Published in Genome Announc (2018)

Correction for Pinto et al., “Draft Genome Sequences of Novel Pseudomonas, Flavobacterium, and Sediminibacterium Strains from a Freshwater Ecosystem”

by Pinto, Federica, Tett, Adrian, Armanini, Federica, Asnicar, Francesco, Boscaini, Adriano, Pasolli, Edoardo, Zolfo, Moreno, Donati, Claudio, Salmaso, Nico, Segata, Nicola
Published in Genome Announc (2018)

Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

by Asnicar, Francesco, Manara, Serena, Zolfo, Moreno, Truong, Duy Tin, Scholz, Matthias, Armanini, Federica, Ferretti, Pamela, Gorfer, Valentina, Pedrotti, Anna, Tett, Adrian, Segata, Nicola
Published in mSystems (2017)

Untargeted Metagenomic Investigation of the Airway Microbiome of Cystic Fibrosis Patients with Moderate-Severe Lung Disease

by Bacci, Giovanni, Taccetti, Giovanni, Dolce, Daniela, Armanini, Federica, Segata, Nicola, Di Cesare, Francesca, Lucidi, Vincenzina, Fiscarelli, Ersilia, Morelli, Patrizia, Casciaro, Rosaria, Negroni, Anna, Mengoni, Alessio, Bevivino, Annamaria
Published in Microorganisms (2020)

Strong oral plaque microbiome signatures for dental implant diseases identified by strain-resolution metagenomics

by Ghensi, Paolo, Manghi, Paolo, Zolfo, Moreno, Armanini, Federica, Pasolli, Edoardo, Bolzan, Mattia, Bertelle, Alberto, Dell’Acqua, Federico, Dellasega, Ester, Waldner, Romina, Tessarolo, Francesco, Tomasi, Cristiano, Segata, Nicola
Published in NPJ Biofilms Microbiomes (2020)

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

by Tett, Adrian, Pasolli, Edoardo, Farina, Stefania, Truong, Duy Tin, Asnicar, Francesco, Zolfo, Moreno, Beghini, Francesco, Armanini, Federica, Jousson, Olivier, De Sanctis, Veronica, Bertorelli, Roberto, Girolomoni, Giampiero, Cristofolini, Mario, Segata, Nicola
Published in NPJ Biofilms Microbiomes (2017)

Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital

by Manara, Serena, Pasolli, Edoardo, Dolce, Daniela, Ravenni, Novella, Campana, Silvia, Armanini, Federica, Asnicar, Francesco, Mengoni, Alessio, Galli, Luisa, Montagnani, Carlotta, Venturini, Elisabetta, Rota-Stabelli, Omar, Grandi, Guido, Taccetti, Giovanni, Segata, Nicola
Published in Genome Med (2018)

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

by Pasolli, Edoardo, Asnicar, Francesco, Manara, Serena, Zolfo, Moreno, Karcher, Nicolai, Armanini, Federica, Beghini, Francesco, Manghi, Paolo, Tett, Adrian, Ghensi, Paolo, Collado, Maria Carmen, Rice, Benjamin L., DuLong, Casey, Morgan, Xochitl C., Golden, Christopher D., Quince, Christopher, Huttenhower, Curtis, Segata, Nicola
Published in Cell (2019)

Faecal microbiota transplantation for the treatment of diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal cell carcinoma

by Ianiro, Gianluca, Rossi, Ernesto, Thomas, Andrew M., Schinzari, Giovanni, Masucci, Luca, Quaranta, Gianluca, Settanni, Carlo Romano, Lopetuso, Loris Riccardo, Armanini, Federica, Blanco-Miguez, Aitor, Asnicar, Francesco, Consolandi, Clarissa, Iacovelli, Roberto, Sanguinetti, Maurizio, Tortora, Giampaolo, Gasbarrini, Antonio, Segata, Nicola, Cammarota, Giovanni
Published in Nat Commun (2020)

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

by Karcher, Nicolai, Pasolli, Edoardo, Asnicar, Francesco, Huang, Kun D., Tett, Adrian, Manara, Serena, Armanini, Federica, Bain, Debbie, Duncan, Sylvia H., Louis, Petra, Zolfo, Moreno, Manghi, Paolo, Valles-Colomer, Mireia, Raffaetà, Roberta, Rota-Stabelli, Omar, Collado, Maria Carmen, Zeller, Georg, Falush, Daniel, Maixner, Frank, Walker, Alan W., Huttenhower, Curtis, Segata, Nicola
Published in Genome Biol (2020)

Methicillin-resistant Staphylococcus aureus eradication in cystic fibrosis patients: A randomized multicenter study

by Dolce, Daniela, Neri, Stella, Grisotto, Laura, Campana, Silvia, Ravenni, Novella, Miselli, Francesca, Camera, Erica, Zavataro, Lucia, Braggion, Cesare, Fiscarelli, Ersilia V., Lucidi, Vincenzina, Cariani, Lisa, Girelli, Daniela, Faelli, Nadia, Colombo, Carla, Lucanto, Cristina, Lombardo, Mariangela, Magazzù, Giuseppe, Tosco, Antonella, Raia, Valeria, Manara, Serena, Pasolli, Edoardo, Armanini, Federica, Segata, Nicola, Biggeri, Annibale, Taccetti, Giovanni
Published in PLoS One (2019)

The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

by Tett, Adrian, Huang, Kun D., Asnicar, Francesco, Fehlner-Peach, Hannah, Pasolli, Edoardo, Karcher, Nicolai, Armanini, Federica, Manghi, Paolo, Bonham, Kevin, Zolfo, Moreno, De Filippis, Francesca, Magnabosco, Cara, Bonneau, Richard, Lusingu, John, Amuasi, John, Reinhard, Karl, Rattei, Thomas, Boulund, Fredrik, Engstrand, Lars, Zink, Albert, Collado, Maria Carmen, Littman, Dan R., Eibach, Daniel, Ercolini, Danilo, Rota-Stabelli, Omar, Huttenhower, Curtis, Maixner, Frank, Segata, Nicola
Published in Cell Host Microbe (2019)

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission

by Duranti, Sabrina, Lugli, Gabriele Andrea, Mancabelli, Leonardo, Armanini, Federica, Turroni, Francesca, James, Kieran, Ferretti, Pamela, Gorfer, Valentina, Ferrario, Chiara, Milani, Christian, Mangifesta, Marta, Anzalone, Rosaria, Zolfo, Moreno, Viappiani, Alice, Pasolli, Edoardo, Bariletti, Ilaria, Canto, Rosarita, Clementi, Rosanna, Cologna, Marina, Crifò, Tiziana, Cusumano, Giuseppina, Fedi, Sabina, Gottardi, Stefania, Innamorati, Claudia, Masè, Caterina, Postai, Daniela, Savoi, Daniela, Soffiati, Massimo, Tateo, Saverio, Pedrotti, Anna, Segata, Nicola, van Sinderen, Douwe, Ventura, Marco
Published in Microbiome (2017)

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

by Ferretti, Pamela, Pasolli, Edoardo, Tett, Adrian, Asnicar, Francesco, Gorfer, Valentina, Fedi, Sabina, Armanini, Federica, Truong, Duy Tin, Manara, Serena, Zolfo, Moreno, Beghini, Francesco, Bertorelli, Roberto, De Sanctis, Veronica, Bariletti, Ilaria, Canto, Rosarita, Clementi, Rosanna, Cologna, Marina, Crifò, Tiziana, Cusumano, Giuseppina, Gottardi, Stefania, Innamorati, Claudia, Masè, Caterina, Postai, Daniela, Savoi, Daniela, Duranti, Sabrina, Lugli, Gabriele Andrea, Mancabelli, Leonardo, Turroni, Francesca, Ferrario, Chiara, Milani, Christian, Mangifesta, Marta, Anzalone, Rosaria, Viappiani, Alice, Yassour, Moran, Vlamakis, Hera, Xavier, Ramnik, Collado, Carmen Maria, Koren, Omry, Tateo, Saverio, Soffiati, Massimo, Pedrotti, Anna, Ventura, Marco, Huttenhower, Curtis, Bork, Peer, Segata, Nicola
Published in Cell Host Microbe (2018)

Abstracts from the 23rd Italian congress of Cystic Fibrosis and the 13th National congress of Cystic Fibrosis Italian Society: Naples, Italy. 22-25 November 2017

by Bevivino, Annamaria, Coiana, Alessandra, Fogazzi, Annalisa, Timelli, Fabiana, Signorini, Sandra, Lucarelli, Marco, Morelli, Patrizia, Padoan, Rita, Giordani, Barbara, Amato, Annalisa, Majo, Fabio, Ferrari, Gianluca, Quattrucci, Serena, Minicucci, Laura, Floridia, Giovanna, Fornaro, Gianna Puppo, Taruscio, Domenica, Salvatore, Marco, Seia, Manuela, Pierandrei, Silvia, Blaconà, Giovanna, Salvati, Valentina, Sette, Giovanni, Cimino, Giuseppe, Sangiuolo, Federica, Eramo, Adriana, Lucarelli, Marco, Collura, Mirella, Parisi, Elisa, Ferlisi, Annalisa, Traverso, Gabriella, Bertolino, Marcella, Termini, Lisa, Orlando, Maria A., Di Girgenti, Caterina, Pavone, Valeria, Calamia, Maria A., Silvestro, Maria G., Piparo, Caterina Lo, Ficili, Francesca, Colombo, Carla, Tullis, Elizabeth, Davies, Jane C., McKee, Charlotte, DeSouza, Cynthia, Waltz, David, Savage, Jessica, Fisher, Marc, Shilling, Rebecca, Moskowitz, Sam, Robertson, Sarah, Tian, Simon, Taylor-Cousar, Jennifer L., Rowe, Steven M., Beccia, Elisa, Carbone, Annalucia, Favia, Maria, Castellani, Stefano, Seia, Manuela, Angiolillo, Antonella, Colombo, Carla, Casavola, Valeria, Conese, Massimo, Padoan, Rita, Cesana, Bruno M., Falchetti, Diego, Battistini, Fiorella, Bignamini, Elisabetta, Braggion, Cesare, Collura, Mirella, Cirilli, Natalia, Lucanto, Maria C., Lucidi, Vincenzina, Manca, Antonio, Raia, Valeria, Rotolo, Novella, Salvatore, Donatello, Volpi, Sonia, Nazzari, Erica, Guarise, Riccardo, Mileto, Palmiro, Garbarino, Francesca, Alicandro, Gianfranco, Battezzati, Alberto, Colombo, Carla, Giordani, Barbara, Amato, Annalisa, Majo, Fabio, Ferrari, Gianluca, Quattrucci, Serena, Minicucci, Laura, Padoan, Rita, Floridia, Giovanna, Fornaro, Gianna Puppo, Taruscio, Domenica, Salvatore, Marco, Di Lullo, Antonella M., Comegna, Marika, Amato, Felice, Iacotucci, Paola, Carnovale, Vincenzo, Cantone, Elena, Iengo, Maurizio, Castaldo, Giuseppe, Orlando, Claudio, Casale, Alida, Sepe, Angela, De Gregorio, Fabiola, De Matteo, Antonia, Castaldo, Alice, Cimbalo, Chiara, Tosco, Antonella, Raia, Valeria, Savi, Daniela, Quattrucci, Serena, Mordenti, Michela, Bonci, Enea, Troiani, Patrizia, D’Alù, Viviana, Rossi, Paolo, Varchetta, Monica, Perelli, Tamara, Bertasi, Serenella, Palange, Paolo, Cimino, Giuseppe, Tardino, Lucia, Parisi, Giuseppe F., Portale, Anna, Franzonello, Chiara, Papale, Maria, Rotolo, Novella, Leonardi, Salvatore, Parisi, Giuseppe F., Tardino, Lucia, Papale, Maria, Franzonello, Chiara, Pennisi, Francesca, Rotolo, Novella, Leonardi, Salvatore, Bruno, Sabina M., Licciardello, Giulia, Pierandrei, Silvia, Ferraguti, Giampiero, Quattrucci, Serena, Lucarelli, Marco, Ferraguti, Giampiero, Sterrantino, Manuela, Bruno, Sabina M., Pierandrei, Silvia, Testino, Giancarlo, Cimino, Giuseppe, Bertasi, Serenella, Lucarelli, Marco, Salvatore, Donatello, Padoan, Rita, Buzzetti, Roberto, Amato, Annalisa, Giordani, Barbara, Ferrari, Gianluca, Majo, Fabio, Surace, Cecilia, Lucarelli, Marco, Sofia, Valentina M., Majo, Fabio, Cimino, Giuseppe, Pierandrei, Silvia, Ullmann, Nicola, Lucidi, Vincenzina, Novelli, Antonio, Angioni, Adriano, Comegna, Marika, Di Lullo, Antonella M., Liguori, Renato, Manzoni, Francesca, Di Palma, Chiara, Maietta, Sabrina, Zarrilli, Federica, Amato, Felice, Sofia, Valentina M., Surace, Cecilia, Terlizzi, Vito, Alghisi, Federico, Angiolillo, Antonella, Braggion, Cesare, Cirilli, Natalia, Colombo, Carla, Di Lullo, Antonella M., Padoan, Rita, Quattrucci, Serena, Raia, Valeria, Tuccio, Giuseppe, Zarrilli, Federica, Novelli, Antonio, Lucidi, Vincenzina, Lucarelli, Marco, Castaldo, Giuseppe, Angioni, Adriano, Tradati, Valentina, di Stefano, Eliana, Padoan, Rita, Collura, Mirella, Dato, Patrizia, Sciarrabone, Maria G., Fondacaro, Carmela, Termini, Lisa, Ferlisi, Annalisa, Orlando, Maria A., Traverso, Gabriella, Bertolino, Marcella, Ficili, Francesca, Cresta, Federico, Baglioni, Valentina, Garuti, Silvia, Buffoni, Isabella, Landi, Francesca, Casciaro, Rosaria, Minicucci, Laura, Girelli, Daniela, Teri, Antonio, Sottotetti, Samantha, Biffi, Arianna, Vignati, Chiara, D’accico, Monica, Maraschini, Anna, Arghittu, Milena, Colombo, Carla, Pizzamiglio, Giovanna, Cariani, Elisa, Dolce, Daniela, Ravenni, Novella, Campana, Silvia, Camera, Erica, Castellani, Carlo, Guarise, Riccardo, Braggion, Cesare, Taccetti, Giovanni, Morelli, Patrizia, Calderone, Eleonora, Bandettini, Roberto, Guarise, Riccardo, Innocenti, Chiara Degli, Castellani, Chiara, Masi, Eleonora, Terlizzi, Vito, Cavicchi, Maria Chiara, Ferrari, Beatrice, Pezzotta, Ramona, Poli, Piercarlo, Messali, Serena, Timpano, Silvana, Padoan, Rita, Scaltriti, Erika, Pongolini, Stefano, Fiorentini, Simona, Bresci, Silvia, Corsi, Lorenzo, Guarise, Riccardo, Borchi, Beatrice, Cavallo, Annalisa, Bartalesi, Filippo, Pistolesi, Massimo, Bartoloni, Alessandro, Braggion, Cesare, Collura, Mirella, Ficili, Francesca, Termini, Lisa, Orlando, Maria A., Traverso, Gabriella, Arcoleo, Federica, Pensabene, Tiziana, Bertolino, Marcella, Calamia, Maria A., Ferlisi, Annalisa, Bevivino, Annamaria, Bacci, Giovanni, Armanini, Federica, Taccetti, Giovanni, Lucidi, Vincenzina, Dolce, Daniela, Morelli, Patrizia, Fiscarelli, Ersilia V., Segata, Nicola, Mengoni, Alessio, Giordani, Barbara, Amato, Annalisa, Majo, Fabio, Ferrari, Gianluca, Quattrucci, Serena, Minicucci, Laura, Padoan, Rita, Floridia, Giovanna, Fornaro, Gianna Puppo, Taruscio, Domenica, Salvatore, Marco, Di Toppa, Maria V., Popa, Nicoleta, Alghisi, Federico, Felicetti, Francesco, Graziano, Sonia, Ciprandi, Riccardo, Pescini, Rita, Graffigna, Guendalina, Barello, Serena, Casciaro, Rosaria, Cresta, Federico, Minicucci, Laura, Catastini, Paola, De Masi, Salvatore, Braggion, C., Calamia, Maria A., Ferlisi, Annalisa, Silvestro, Maria G., Guarnuto, Lucia, Ficili, Francesca, Di Liberti, Emanuela, Patti, Valentina, Collura, Mirella, Poli, Piercarlo, Tradati, Valentina, Padoan, Rita, Castellazzi, Massimo Luca, Daccò, Valeria, Claut, Laura, Colombo, Carla, Giuliari, Matteo, Vicentini, Luana, Tilotta, Fausto, Paciaroni, Antonella, Sala, Sabino Della, Guerzoni, Cristina, Andreatta, Elisa, Dinnella, Grazia, Termini, Lisa, Pavone, Valeria, Parisi, Elisa, Ficili, Francesca, Orlando, Maria A., Ferlisi, Annalisa, Traverso, Gabriella, Granata, Orazia M., Aronica, Tommaso S., Crapisi, Mimì, Fogazza, Donatella, Bertolino, Marcella, Collura, Mirella, Collura, Mirella, Alessi, Luca, Mulè, Flavia, Vitaliti, Marcello, Maresi, Mariarosaria, Orlando, Maria A., Ferlisi, Annalisa, Traverso, Gabriella, Termini, Lisa, Bertolino, Marcella, Ficili, Francesca, De Gregorio, Fabiola, Tosco, Antonella, Casale, Alida, Sepe, Angela, Cimbalo, Chiara, Catzola, Andrea, Castaldo, Alice, Salvadori, Laura, Raia, Valeria, Salvatore, Donatello, Colangelo, Carmela, Marsicovetere, Giovanni, D’Andria, Michele, Passarella, Domenica, Genovese, Carmela, Collura, Mirella, Parisi, Elisa, Ferlisi, Annalisa, Orlando, Mari A., Traverso, Gabriella, Termini, Lisa, Bertolino, Marcella, Di Girgenti, Caterina, Calamia, Maria A., Silvestro, Maria G., Barrale, Stefania, Bonaccorso, Maria R., D’Arpa, Annalisa, Ficili, Francesca
Published in Ital J Pediatr (2018)