A modular strategy for engineering orthogonal chimeric RNA transcription regulators

Por Takahashi, Melissa K., Lucks, Julius B.
Publicado em 2013

Achieving large dynamic range control of gene expression with a compact RNA transcription–translation regulator

Por Westbrook, Alexandra M., Lucks, Julius B.
Publicado no Nucleic Acids Res (2017)

An RNA Mapping DataBase for curating RNA structure mapping experiments

Por Cordero, Pablo, Lucks, Julius B., Das, Rhiju
Publicado em 2012

Characterizing the structure-function relationship of a naturally-occurring RNA thermometer

Por Meyer, Sarai, Carlson, Paul D., Lucks, Julius B.
Publicado no Biochemistry (2017)

Evolution, ecology and the engineered organism: lessons for synthetic biology

Por Skerker, Jeffrey M, Lucks, Julius B, Arkin, Adam P
Publicado em 2009

Simultaneous characterization of cellular RNA structure and function with in-cell SHAPE-Seq

Por Watters, Kyle E., Abbott, Timothy R., Lucks, Julius B.
Publicado no Nucleic Acids Res (2016)

Computational design of small transcription activating RNAs for versatile and dynamic gene regulation

Por Chappell, James, Westbrook, Alexandra, Verosloff, Matthew, Lucks, Julius B.
Publicado no Nat Commun (2017)

SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing

Por Loughrey, David, Watters, Kyle E., Settle, Alexander H., Lucks, Julius B.
Publicado no Nucleic Acids Res (2014)

RNA systems biology: uniting functional discoveries and structural tools to understand global roles of RNAs

Por Strobel, Eric J., Watters, Kyle E., Loughrey, David, Lucks, Julius B.
Publicado no Curr Opin Biotechnol (2016)

Genome Landscapes and Bacteriophage Codon Usage

Por Lucks, Julius B., Nelson, David R., Kudla, Grzegorz R., Plotkin, Joshua B.
Publicado em 2008

Versatile RNA-sensing transcriptional regulators for engineering genetic networks

Por Lucks, Julius B., Qi, Lei, Mutalik, Vivek K., Wang, Denise, Arkin, Adam P.
Publicado em 2011

Distributed biotin–streptavidin transcription roadblocks for mapping cotranscriptional RNA folding

Por Strobel, Eric J., Watters, Kyle E., Nedialkov, Yuri, Artsimovitch, Irina, Lucks, Julius B.
Publicado no Nucleic Acids Res (2017)

Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals

Por Qi, Lei, Lucks, Julius B., Liu, Chang C., Mutalik, Vivek K., Arkin, Adam P.
Publicado em 2012

Cotranscriptional Folding of a Riboswitch at Nucleotide Resolution

Por Watters, Kyle E., Strobel, Eric J., Yu, Angela M, Lis, John T., Lucks, Julius B.
Publicado no Nat Struct Mol Biol (2016)

Characterizing RNA structures in vitro and in vivo with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

Por Watters, Kyle E., Yu, Angela M, Strobel, Eric J., Settle, Alex H., Lucks, Julius B.
Publicado no Methods (2016)

Probing of RNA structures in a positive sense RNA virus reveals selection pressures for structural elements

Por Watters, Kyle E, Choudhary, Krishna, Aviran, Sharon, Lucks, Julius B, Perry, Keith L, Thompson, Jeremy R
Publicado no Nucleic Acids Res (2018)

Using in-cell SHAPE-Seq and simulations to probe structure–function design principles of RNA transcriptional regulators

Por Takahashi, Melissa K., Watters, Kyle E., Gasper, Paul M., Abbott, Timothy R., Carlson, Paul D., Chen, Alan A., Lucks, Julius B.
Publicado no RNA (2016)

Modeling and automation of sequencing-based characterization of RNA structure

Por Aviran, Sharon, Trapnell, Cole, Lucks, Julius B., Mortimer, Stefanie A., Luo, Shujun, Schroth, Gary P., Doudna, Jennifer A., Arkin, Adam P., Pachter, Lior
Publicado em 2011

Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

Por Lucks, Julius B., Mortimer, Stefanie A., Trapnell, Cole, Luo, Shujun, Aviran, Sharon, Schroth, Gary P., Pachter, Lior, Doudna, Jennifer A., Arkin, Adam P.
Publicado em 2011

Rapidly Characterizing the Fast Dynamics of RNA Genetic Circuitry with Cell-Free Transcription–Translation (TX-TL) Systems

Por Takahashi, Melissa K., Chappell, James, Hayes, Clarmyra A., Sun, Zachary Z., Kim, Jongmin, Singhal, Vipul, Spring, Kevin J., Al-Khabouri, Shaima, Fall, Christopher P., Noireaux, Vincent, Murray, Richard M., Lucks, Julius B.
Publicado no ACS Synth Biol (2014)