Propensity Score Method for Partially Matched Omics Studies

Por Kuan, Pei-Fen
Publicado no Cancer Inform (2014)

A Simple and Robust Method for Partially Matched Samples Using the P-Values Pooling Approach

Por Kuan, Pei Fen, Huang, Bo
Publicado em 2013

Integrating Prior Knowledge in Multiple Testing under Dependence with Applications to Detecting Differential DNA Methylation

Por Kuan, Pei Fen, Chiang, Derek Y.
Publicado em 2012

CMARRT: A Tool for the Analysis of ChIP-chip Data from Tiling Arrays by Incorporating the Correlation Structure

Por Kuan, Pei Fen, Chun, Hyonho, Keleş, Sündüz
Publicado em 2008

Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data

Por Zacher, Benedikt, Kuan, Pei Fen, Tresch, Achim
Publicado em 2010

A Non-Homogeneous Hidden-State Model on First Order Differences for Automatic Detection of Nucleosome Positions

Por Kuan, Pei Fen, Huebert, Dana, Gasch, Audrey, Keles, Sunduz
Publicado em 2009

A statistical framework for Illumina DNA methylation arrays

Por Kuan, Pei Fen, Wang, Sijian, Zhou, Xin, Chu, Haitao
Publicado em 2010

Dynamic Changes in Nucleosome Occupancy Are Not Predictive of Gene Expression Dynamics but Are Linked to Transcription and Chromatin Regulators

Por Huebert, Dana J., Kuan, Pei-Fen, Keleş, Sündüz, Gasch, Audrey P.
Publicado em 2012

Multivariate Boosting for Integrative Analysis of High-Dimensional Cancer Genomic Data

Por Xiong, Lie, Kuan, Pei-Fen, Tian, Jianan, Keles, Sunduz, Wang, Sijian
Publicado no Cancer Inform (2015)

A systematic evaluation of nucleotide properties for CRISPR sgRNA design

Por Kuan, Pei Fen, Powers, Scott, He, Shuyao, Li, Kaiqiao, Zhao, Xiaoyu, Huang, Bo
Publicado no BMC Bioinformatics (2017)

A Statistical Framework for the Analysis of ChIP-Seq Data

Por Kuan, Pei Fen, Chung, Dongjun, Pan, Guangjin, Thomson, James A., Stewart, Ron, Keleş, Sündüz
Publicado no J Am Stat Assoc (2012)

Rho directs widespread termination of intragenic and stable RNA transcription

Por Peters, Jason M., Mooney, Rachel A., Kuan, Pei Fen, Rowland, Jennifer L., Keleş, Sündüz, Landick, Robert
Publicado em 2009

Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data

Por Chung, Dongjun, Kuan, Pei Fen, Li, Bo, Sanalkumar, Rajendran, Liang, Kun, Bresnick, Emery H., Dewey, Colin, Keleş, Sündüz
Publicado em 2011

The Ca(v)β(1a) subunit regulates gene expression and suppresses myogenin in muscle progenitor cells

Por Taylor, Jackson, Pereyra, Andrea, Zhang, Tan, Messi, Maria Laura, Wang, Zhong-Min, Hereñú, Claudia, Kuan, Pei-Fen, Delbono, Osvaldo
Publicado em 2014

A systematic assessment of normalization approaches for the Infinium 450K methylation platform

Por Wu, Michael C, Joubert, Bonnie R, Kuan, Pei-fen, Håberg, Siri E, Nystad, Wenche, Peddada, Shyamal D, London, Stephanie J
Publicado em 2014

Obesity increases tumor aggressiveness in a genetically engineered mouse model of serous ovarian cancer()

Por Makowski, Liza, Zhou, Chunxiao, Zhong, Yan, Kuan, Pei Fen, Fan, Cheng, Sampey, Brante P., Difurio, Megan, Bae-Jump, Victoria L.
Publicado em 2014

Three Molecular Subtypes of Gastric Adenocarcinoma Have Distinct Histochemical Features Reflecting Epstein-Barr Virus Infection Status and Neuroendocrine Differentiation

Por Speck, Olga, Tang, Weihua, Morgan, Douglas R., Kuan, Pei Fen, Meyers, Michael O., Dominguez, Ricardo L., Martinez, Enrique, Gulley, Margaret L.
Publicado no Appl Immunohistochem Mol Morphol (2015)

Breast tumor DNA methylation patterns associated with smoking in the Carolina Breast Cancer Study

Por Conway, Kathleen, Edmiston, Sharon N., Parrish, Eloise, Bryant, Christopher, Tse, Chiu-Kit, Swift-Scanlan, Theresa, McCullough, Lauren E., Kuan, Pei Fen
Publicado no Breast Cancer Res Treat (2017)

Racial variation in breast tumor promoter methylation in the Carolina Breast Cancer Study

Por Conway, Kathleen, Edmiston, Sharon N., Tse, Chiu-Kit, Bryant, Christopher, Kuan, Pei Fen, Hair, Brionna Y., Parrish, Eloise A., May, Ryan, Swift-Scanlan, Theresa
Publicado no Cancer Epidemiol Biomarkers Prev (2015)

A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets

Por Wei, Hairong, Kuan, Pei Fen, Tian, Shulan, Yang, Chuhu, Nie, Jeff, Sengupta, Srikumar, Ruotti, Victor, Jonsdottir, Gudrun A., Keles, Sunduz, Thomson, James A., Stewart, Ron
Publicado em 2008