MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations

Tekijä Keilwagen, Jens, Baumbach, Jan, Kohl, Thomas A, Grosse, Ivo
Julkaistu 2009

Mycobacterium bovis Persistence in Two Different Captive Wild Animal Populations in Germany: a Longitudinal Molecular Epidemiological Study Revealing Pathogen Transmission by Whole...

Tekijä Kohl, Thomas A., Utpatel, Christian, Niemann, Stefan, Moser, Irmgard
Julkaisussa J Clin Microbiol (2018)

From Corynebacterium glutamicum to Mycobacterium tuberculosis—towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet

Tekijä Krawczyk, Justina, Kohl, Thomas A., Goesmann, Alexander, Kalinowski, Jörn, Baumbach, Jan
Julkaistu 2009

Harmonized Genome Wide Typing of Tubercle Bacilli Using a Web-Based Gene-By-Gene Nomenclature System

Tekijä Kohl, Thomas A., Harmsen, Dag, Rothgänger, Jörg, Walker, Timothy, Diel, Roland, Niemann, Stefan
Julkaisussa EBioMedicine (2018)

Population Structure of Mycobacterium bovis in Germany: a Long-Term Study Using Whole-Genome Sequencing Combined with Conventional Molecular Typing Methods

Tekijä Kohl, Thomas A., Kranzer, Katharina, Andres, Sönke, Wirth, Thierry, Niemann, Stefan, Moser, Irmgard
Julkaisussa J Clin Microbiol (2020)

rplC T460C Identified as a Dominant Mutation in Linezolid-Resistant Mycobacterium tuberculosis Strains

Tekijä Beckert, Patrick, Hillemann, Doris, Kohl, Thomas A., Kalinowski, Jörn, Richter, Elvira, Niemann, Stefan, Feuerriegel, Silke
Julkaistu 2012

Mycobacterium abscessus subsp. abscessus Is Capable of Degrading Pseudomonas aeruginosa Quinolone Signals

Tekijä Birmes, Franziska S., Wolf, Timo, Kohl, Thomas A., Rüger, Kai, Bange, Franz, Kalinowski, Jörn, Fetzner, Susanne
Julkaisussa Front Microbiol (2017)

Tracing the Spread of Clostridium difficile Ribotype 027 in Germany Based on Bacterial Genome Sequences

Tekijä Steglich, Matthias, Nitsche, Andreas, von Müller, Lutz, Herrmann, Mathias, Kohl, Thomas A., Niemann, Stefan, Nübel, Ulrich
Julkaisussa PLoS One (2015)

Detection of low-frequency resistance-mediating SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains with binoSNP

Tekijä Dreyer, Viola, Utpatel, Christian, Kohl, Thomas A., Barilar, Ivan, Gröschel, Matthias I., Feuerriegel, Silke, Niemann, Stefan
Julkaisussa Sci Rep (2020)

Survival of hypoxia-induced dormancy is not a common feature of all strains of the Mycobacterium tuberculosis complex

Tekijä Tizzano, Barbara, Dallenga, Tobias K., Utpatel, Christian, Behrends, Jochen, Homolka, Susanne, Kohl, Thomas A., Niemann, Stefan
Julkaisussa Sci Rep (2021)

Whole-Genome Sequencing for Risk Assessment of Long-term Shiga Toxin–producing Escherichia coli

Tekijä Knobloch, Johannes K.-M., Niemann, Stefan, Kohl, Thomas A., Lindner, Ulrich, Nitschke, Martin, Sayk, Friedhelm, Solbach, Werner
Julkaistu 2014

Drug-resistance profiling and transmission dynamics of multidrug-resistant Mycobacterium tuberculosis in Saudi Arabia revealed by whole genome sequencing

Tekijä Al-Ghafli, Hawra, Kohl, Thomas A, Merker, Matthias, Varghese, Bright, Halees, Anason, Niemann, Stefan, Al-Hajoj, Sahal
Julkaisussa Infect Drug Resist (2018)

Whole-Genome-Based Mycobacterium tuberculosis Surveillance: a Standardized, Portable, and Expandable Approach

Tekijä Kohl, Thomas A., Diel, Roland, Harmsen, Dag, Rothgänger, Jörg, Walter, Karen Meywald, Merker, Matthias, Weniger, Thomas, Niemann, Stefan
Julkaistu 2014

Insertion and deletion evolution reflects antibiotics selection pressure in a Mycobacterium tuberculosis outbreak

Tekijä Godfroid, Maxime, Dagan, Tal, Merker, Matthias, Kohl, Thomas A., Diel, Roland, Maurer, Florian P., Niemann, Stefan, Kupczok, Anne
Julkaisussa PLoS Pathog (2020)

Longitudinal Outbreak of Multidrug-Resistant Tuberculosis in a Hospital Setting, Serbia

Tekijä Arandjelović, Irena, Merker, Matthias, Richter, Elvira, Kohl, Thomas A., Savić, Branislava, Soldatović, Ivan, Wirth, Thierry, Vuković, Dragana, Niemann, Stefan
Julkaisussa Emerg Infect Dis (2019)

Analysis of Phylogenetic Variation of Stenotrophomonas maltophilia Reveals Human-Specific Branches

Tekijä Steinmann, Joerg, Mamat, Uwe, Abda, Ebrahim M., Kirchhoff, Lisa, Streit, Wolfgang R., Schaible, Ulrich E., Niemann, Stefan, Kohl, Thomas A.
Julkaisussa Front Microbiol (2018)

Phenylacetic Acid Catabolism and Its Transcriptional Regulation in Corynebacterium glutamicum

Tekijä Chen, Xi, Kohl, Thomas A., Rückert, Christian, Rodionov, Dmitry A., Li, Ling-Hao, Ding, Jiu-Yuan, Kalinowski, Jörn, Liu, Shuang-Jiang
Julkaistu 2012

PhyResSE: a Web Tool Delineating Mycobacterium tuberculosis Antibiotic Resistance and Lineage from Whole-Genome Sequencing Data

Tekijä Feuerriegel, Silke, Schleusener, Viola, Beckert, Patrick, Kohl, Thomas A., Miotto, Paolo, Cirillo, Daniela M., Cabibbe, Andrea M., Niemann, Stefan, Fellenberg, Kurt
Julkaisussa J Clin Microbiol (2015)

Accuracy of whole-genome sequencing to determine recent tuberculosis transmission: an 11-year population-based study in Hamburg, Germany

Tekijä Diel, Roland, Kohl, Thomas A., Maurer, Florian P., Merker, Matthias, Meywald Walter, Karen, Hannemann, Jörg, Nienhaus, Albert, Supply, Philip, Niemann, Stefan
Julkaisussa Eur Respir J (2019)

High Interlaboratory Reproducibility and Accuracy of Next-Generation-Sequencing-Based Bacterial Genotyping in a Ring Trial

Tekijä Mellmann, Alexander, Andersen, Paal Skytt, Bletz, Stefan, Friedrich, Alexander W., Kohl, Thomas A., Lilje, Berit, Niemann, Stefan, Prior, Karola, Rossen, John W., Harmsen, Dag
Julkaisussa J Clin Microbiol (2017)