RiboSketch: versatile visualization of multi-stranded RNA and DNA secondary structure

af Lu, Jacob S, Bindewald, Eckart, Kasprzak, Wojciech K, Shapiro, Bruce A
Udgivet i Bioinformatics (2018)

The role of a metastable RNA secondary structure in hepatitis delta virus genotype III RNA editing

af Linnstaedt, Sarah D., Kasprzak, Wojciech K., Shapiro, Bruce A., Casey, John L.
Udgivet 2006

The fraction of RNA that folds into the correct branched secondary structure determines hepatitis delta virus type 3 RNA editing levels

af Linnstaedt, Sarah D., Kasprzak, Wojciech K., Shapiro, Bruce A., Casey, John L.
Udgivet 2009

Combined single molecule experimental and computational approaches for understanding the unfolding pathway of a viral translation enhancer that participates in a conformational swi...

af Le, My-Tra, Kasprzak, Wojciech K., Shapiro, Bruce A., Simon, Anne E.
Udgivet i RNA Biol (2017)

RNA2Drawer: geometrically strict drawing of nucleic acid structures with graphical structure editing and highlighting of complementary subsequences

af Johnson, Philip Z., Kasprzak, Wojciech K., Shapiro, Bruce A., Simon, Anne E.
Udgivet i RNA Biol (2019)

The 3′ Untranslated Region of Pea Enation Mosaic Virus Contains Two T-Shaped, Ribosome-Binding, Cap-Independent Translation Enhancers

af Gao, Feng, Kasprzak, Wojciech K., Szarko, Christine, Shapiro, Bruce A., Simon, Anne E.
Udgivet 2014

RNA–Protein Interactions Prevent Long RNA Duplex Formation: Implications for the Design of RNA-Based Therapeutics

af Bindewald, Eckart, Dai, Lisheng, Kasprzak, Wojciech K., Kim, Taejin, Gu, Shuo, Shapiro, Bruce A.
Udgivet i Molecules (2018)

Inhibition of vemurafenib-resistant melanoma by interference with pre-mRNA splicing

af Salton, Maayan, Kasprzak, Wojciech K., Voss, Ty, Shapiro, Bruce A., Poulikakos, Poulikos I., Misteli, Tom
Udgivet i Nat Commun (2015)

In Silico Design and Enzymatic Synthesis of Functional RNA Nanoparticles

af Afonin, Kirill A., Kasprzak, Wojciech K., Bindewald, Eckart, Kireeva, Maria, Viard, Mathias, Kashlev, Mikhail, Shapiro, Bruce A.
Udgivet 2014

Triggering RNAi with multifunctional RNA nanoparticles and their delivery

af Dao, Bich Ngoc, Viard, Mathias, Martins, Angelica N., Kasprzak, Wojciech K., Shapiro, Bruce A., Afonin, Kirill A.
Udgivet i DNA RNA Nanotechnol (2015)

Ribosomal frameshifting in the CCR5 mRNA is regulated by miRNAs and the NMD pathway

af Belew, Ashton Trey, Meskauskas, Arturas, Musalgaonkar, Sharmishtha, Advani, Vivek M., Sulima, Sergey O., Kasprzak, Wojciech K., Shapiro, Bruce A., Dinman, Jonathan D.
Udgivet i Nature (2014)

Folding behavior of a T-shaped, ribosome-binding translation enhancer implicated in a wide-spread conformational switch

af Le, My-Tra, Kasprzak, Wojciech K, Kim, Taejin, Gao, Feng, Young, Megan YL, Yuan, Xuefeng, Shapiro, Bruce A, Seog, Joonil, Simon, Anne E
Udgivet i eLife (2017)

Triggerable RNA nanodevices

af Halman, Justin, Satterwhite, Emily, Smollett, Jaclyn, Bindewald, Eckart, Parlea, Lorena, Viard, Mathias, Zakrevsky, Paul, Kasprzak, Wojciech K., Afonin, Kirill A., Shapiro, Bruce A.
Udgivet i RNA Dis (2017)

Computational and Experimental Characterization of RNA Cubic Nanoscaffolds

af Afonin, Kirill A., Kasprzak, Wojciech K., Bindewald, Eckart, Puppala, Praneet S., Diehl, Alex R., Hall, Kenneth T., Kim, Tae Jin, Zimmermann, Michael T., Jernigan, Robert L., Jaeger, Luc, Shapiro, Bruce A.
Udgivet 2013

Triggering of RNA Interference with RNA–RNA, RNA–DNA, and DNA–RNA Nanoparticles

af Afonin, Kirill A., Viard, Mathias, Kagiampakis, Ioannis, Case, Christopher L., Dobrovolskaia, Marina A., Hofmann, Jen, Vrzak, Ashlee, Kireeva, Maria, Kasprzak, Wojciech K., KewalRamani, Vineet N., Shapiro, Bruce A.
Udgivet i ACS Nano (2014)

Structural Differences between Pri-miRNA Paralogs Promote Alternative Drosha Cleavage and Expand Target Repertoires

af Bofill-De Ros, Xavier, Kasprzak, Wojciech K., Bhandari, Yuba, Fan, Lixin, Cavanaugh, Quinn, Jiang, Minjie, Dai, Lisheng, Yang, Acong, Shao, Tie-Juan, Shapiro, Bruce A., Wang, Yun-Xing, Gu, Shuo
Udgivet i Cell Rep (2019)

Dynamic Behavior of RNA Nanoparticles Analyzed by AFM on a Mica/Air Interface

af Sajja, Sameer, Chandler, Morgan, Fedorov, Dmitry, Kasprzak, Wojciech K., Lushnikov, Alexander, Viard, Mathias, Shah, Ankit, Dang, Dylan, Dahl, Jared, Worku, Beamlak, Dobrovolskaia, Marina A., Krasnoslobodtsev, Alexey, Shapiro, Bruce A., Afonin, Kirill A.
Udgivet i Langmuir (2018)

Multifunctional RNA Nanoparticles

af Afonin, Kirill A., Viard, Mathias, Koyfman, Alexey Y., Martins, Angelica N., Kasprzak, Wojciech K., Panigaj, Martin, Desai, Ravi, Santhanam, Arti, Grabow, Wade W., Jaeger, Luc, Heldman, Eliahu, Reiser, Jakob, Chiu, Wah, Freed, Eric O., Shapiro, Bruce A.
Udgivet 2014

Co-transcriptional production of RNA–DNA hybrids for simultaneous release of multiple split functionalities

af Afonin, Kirill A., Desai, Ravi, Viard, Mathias, Kireeva, Maria L., Bindewald, Eckart, Case, Christopher L., Maciag, Anna E., Kasprzak, Wojciech K., Kim, Taejin, Sappe, Alison, Stepler, Marissa, KewalRamani, Vineet N., Kashlev, Mikhail, Blumenthal, Robert, Shapiro, Bruce A.
Udgivet 2014

Functionally-interdependent shape-switching nanoparticles with controllable properties

af Halman, Justin R., Satterwhite, Emily, Roark, Brandon, Chandler, Morgan, Viard, Mathias, Ivanina, Anna, Bindewald, Eckart, Kasprzak, Wojciech K., Panigaj, Martin, Bui, My N., Lu, Jacob S., Miller, Johann, Khisamutdinov, Emil F., Shapiro, Bruce A., Dobrovolskaia, Marina A., Afonin, Kirill A.
Udgivet i Nucleic Acids Res (2017)