PRG

por Jagtap, Pratik
Publicado en J Biomol Tech (2020)

Multi-omics: Traversing the Central Dogma of Molecular Biology

por Hettich, Robert, Jagtap, Pratik, Mathe, Ewy, Mishra, Tejaswini, Ruggles, Kelly
Publicado en J Biomol Tech (2020)

Bronchoalveolar Lavage Fluid Protein Expression in Acute Respiratory Distress Syndrome Provides Insights into Pathways Activated in Subjects with Different Outcomes

por Bhargava, Maneesh, Viken, Kevin, Wang, Qi, Jagtap, Pratik, Bitterman, Peter, Ingbar, David, Wendt, Chris
Publicado en Sci Rep (2017)

Deep metaproteomic analysis of human salivary supernatant

por Jagtap, Pratik, McGowan, Thomas, Bandhakavi, Sricharan, Tu, Zheng Jin, Seymour, Sean, Griffin, Timothy, Rudney, Joel
Publicado 2012

Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery

por Kooren, Joel A, Rhodus, Nelson L, Tang, Chuanning, Jagtap, Pratik D, Horrigan, Bryan J, Griffin, Timothy J
Publicado 2011

A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies

por Jagtap, Pratik, Goslinga, Jill, Kooren, Joel A., McGowan, Thomas, Wroblewski, Matthew S., Seymour, Sean L., Griffin, Timothy J.
Publicado 2013

Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration

por McGowan, Thomas, Johnson, James E, Kumar, Praveen, Sajulga, Ray, Mehta, Subina, Jagtap, Pratik D, Griffin, Timothy J
Publicado en Gigascience (2020)

Iron-sparing Response of Mycobacterium avium subsp. paratuberculosis is strain dependent

por Janagama, Harish K, Senthilkumar, Bannantine, John P, Kugadas, Abirami, Jagtap, Pratik, Higgins, LeeAnn, Witthuhn, Bruce A, Sreevatsan, Srinand
Publicado 2010

The Galaxy Platform for Reproducible Affinity Proteomic Mass Spectrometry Data Analysis

por Stewart, Paul A, Kuenzi, Brent M, Mehta, Subina, Kumar, Praveen, Johnson, James E, Jagtap, Pratik, Griffin, Timothy J, Haura, Eric B
Publicado en Methods Mol Biol (2019)

A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19)

por Rajczewski, Andrew T., Mehta, Subina, Nguyen, Dinh Duy An, Grüning, Björn, Johnson, James E., McGowan, Thomas, Griffin, Timothy J., Jagtap, Pratik D.
Publicado en Clin Proteomics (2021)

Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries

por Rudney, Joel D., Jagtap, Pratik D., Reilly, Cavan S., Chen, Ruoqiong, Markowski, Todd W., Higgins, LeeAnn, Johnson, James E., Griffin, Timothy J.
Publicado en Microbiome (2015)

A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19).

por Rajczewski, Andrew T., Mehta, Subina, Nguyen, Dinh Duy An, Grüning, Björn A., Johnson, James E., McGowan, Thomas, Griffin, Timothy J., Jagtap, Pratik D.
Publicado en medRxiv (2021)

Novel In Situ Collection of Tumor Interstitial Fluid from a Head and Neck Squamous Carcinoma Reveals a Unique Proteome with Diagnostic Potential

por Stone, Matthew D., Odland, Rick M., McGowan, Thomas, Onsongo, Getiria, Tang, Chaunning, Rhodus, Nelson L., Jagtap, Pratik, Bandhakavi, Sricharan, Griffin, Timothy J.
Publicado 2010

Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

por Sheynkman, Gloria M, Johnson, James E, Jagtap, Pratik D, Shortreed, Michael R, Onsongo, Getiria, Frey, Brian L, Griffin, Timothy J, Smith, Lloyd M
Publicado 2014

Evaluating the potential of residual Pap test fluid as a resource for the metaproteomic analysis of the cervical-vaginal microbiome

por Afiuni-Zadeh, Somaieh, Boylan, Kristin L. M., Jagtap, Pratik D., Griffin, Timothy J., Rudney, Joel D., Peterson, Marnie L., Skubitz, Amy P. N.
Publicado en Sci Rep (2018)

Improve your Galaxy text life: The Query Tabular Tool

por Johnson, James E., Kumar, Praveen, Easterly, Caleb, Esler, Mark, Mehta, Subina, Eschenlauer, Arthur C., Hegeman, Adrian D., Jagtap, Pratik D., Griffin, Timothy J.
Publicado en F1000Res (2019)

metaQuantome: An Integrated, Quantitative Metaproteomics Approach Reveals Connections Between Taxonomy and Protein Function in Complex Microbiomes

por Easterly, Caleb W., Sajulga, Ray, Mehta, Subina, Johnson, James, Kumar, Praveen, Hubler, Shane, Mesuere, Bart, Rudney, Joel, Griffin, Timothy J., Jagtap, Pratik D.
Publicado en Mol Cell Proteomics (2019)

Data Independent Acquisition in Practice: Foundations and Resources for Implementing DIA

por Neely, Benjamin, Kirkpatrick, Joanna, Midha, Mukul, Stemmer, Paul, Martin, LeRoy, Wang, Yan, Herring, Laura, Phinney, Brett, Shan, Baozhen, Chien, Allis, Jagtap, Pratik
Publicado en J Biomol Tech (2019)

BAL Fluid Metaproteome in Acute Respiratory Failure

por Jagtap, Pratik D., Viken, Kevin J., Johnson, James, McGowan, Thomas, Pendleton, Kathryn M., Griffin, Timothy J., Hunter, Ryan C., Rudney, Joel D., Bhargava, Maneesh
Publicado en Am J Respir Cell Mol Biol (2018)

Metaproteomics analysis of SARS-CoV-2-infected patient samples reveals presence of potential co-infecting microorganisms

por Thuy-Boun, Peter S., Mehta, Subina, Gruening, Bjoern, McGowan, Thomas, Nguyen, An, Rajczewski, Andrew, Johnson, James. E, Griffin, Timothy J., Wolan, Dennis W., Jagtap, Pratik D.
Publicado en J Proteome Res (2021)