A dynamic range compression and three-dimensional peptide fractionation analysis platform expands proteome coverage and the diagnostic potential of whole saliva

Por Bandhakavi, Sricharan, Stone, Matthew D., Onsongo, Getiria, Van Riper, Susan K., Griffin, Timothy J.
Publicado em 2009

CLIA-certified next-generation sequencing analysis in the cloud

Por Zhang, Ying, Erdmann, Jesse, Chilton, John, Onsongo, Getiria, Bower, Matthew, Beckman, Kenny, Thyagarajan, Bharat, Silverstein, Kevin, Lamblin, Anne-Francoise
Publicado em 2012

Quantitative Nuclear Proteomics Identifies mTOR Regulation of DNA Damage Response

Por Bandhakavi, Sricharan, Kim, Young-Mi, Ro, Seung-Hyun, Xie, Hongwei, Onsongo, Getiria, Jun, Chang-Bong, Kim, Do-Hyung, Griffin, Timothy J.
Publicado em 2010

Novel In Situ Collection of Tumor Interstitial Fluid from a Head and Neck Squamous Carcinoma Reveals a Unique Proteome with Diagnostic Potential

Por Stone, Matthew D., Odland, Rick M., McGowan, Thomas, Onsongo, Getiria, Tang, Chaunning, Rhodus, Nelson L., Jagtap, Pratik, Bandhakavi, Sricharan, Griffin, Timothy J.
Publicado em 2010

Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

Por Sheynkman, Gloria M, Johnson, James E, Jagtap, Pratik D, Shortreed, Michael R, Onsongo, Getiria, Frey, Brian L, Griffin, Timothy J, Smith, Lloyd M
Publicado em 2014

LTQ-iQuant: A freely-available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments

Por Onsongo, Getiria, Stone, Matthew D., Van Riper, Susan K., Chilton, John, Wu, Baolin, Higgins, LeeAnn, Lund, Troy C., Carlis, John V., Griffin, Timothy J.
Publicado em 2010

Implementation of Cloud based Next Generation Sequencing data analysis in a clinical laboratory

Por Onsongo, Getiria, Erdmann, Jesse, Spears, Michael D, Chilton, John, Beckman, Kenneth B, Hauge, Adam, Yohe, Sophia, Schomaker, Matthew, Bower, Matthew, Silverstein, Kevin A T, Thyagarajan, Bharat
Publicado em 2014

Flexible and Accessible Workflows for Improved Proteogenomic Analysis Using the Galaxy Framework

Por Jagtap, Pratik D., Johnson, James E., Onsongo, Getiria, Sadler, Fredrik W., Murray, Kevin, Wang, Yuanbo, Shenykman, Gloria M., Bandhakavi, Sricharan, Smith, Lloyd M., Griffin, Timothy J.
Publicado no J Proteome Res (2014)

An accessible proteogenomics informatics resource for cancer researchers

Por Chambers, Matthew C., Jagtap, Pratik D., Johnson, James E., McGowan, Thomas, Kumar, Praveen, Onsongo, Getiria, Guerrero, Candace R., Barsnes, Harald, Vaudel, Marc, Martens, Lennart, Grüning, Björn, Cooke, Ira R., Heydarian, Mohammad, Reddy, Karen L., Griffin, Timothy J.
Publicado no Cancer Res (2017)

Quantitative Proteomics Reveals Myosin and Actin as Promising Saliva Biomarkers for Distinguishing Pre-Malignant and Malignant Oral Lesions

Por de Jong, Ebbing P., Xie, Hongwei, Onsongo, Getiria, Stone, Matthew D., Chen, Xiao-Bing, Kooren, Joel A., Refsland, Eric W., Griffin, Robert J., Ondrey, Frank G., Wu, Baolin, Le, Chap T., Rhodus, Nelson L., Carlis, John V., Griffin, Timothy J.
Publicado em 2010