tRNAomics: tRNA gene copy number variation and codon use provide bioinformatic evidence of a new anticodon:codon wobble pair in a eukaryote

Por Iben, James R., Maraia, Richard J.
Publicado em 2012

tRNA gene copy number variation in humans

Por Iben, James R., Maraia, Richard J.
Publicado em 2013

Different types of secondary information in the genetic code

Por Maraia, Richard J., Iben, James R.
Publicado em 2014

Global ‘bootprinting’ reveals the elastic architecture of the yeast TFIIIB–TFIIIC transcription complex in vivo

Por Nagarajavel, V., Iben, James R., Howard, Bruce H., Maraia, Richard J., Clark, David J.
Publicado em 2013

RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast

Por Ganguli, Dwaipayan, Chereji, Răzvan V., Iben, James R., Cole, Hope A., Clark, David J.
Publicado em 2014

Heavy transcription of yeast genes correlates with differential loss of histone H2B relative to H4 and queued RNA polymerases

Por Cole, Hope A., Ocampo, Josefina, Iben, James R., Chereji, Răzvan V., Clark, David J.
Publicado no Nucleic Acids Res (2014)

SNPfisher: tools for probing genetic variation in laboratory-reared zebrafish

Por Butler, Matthew G., Iben, James R., Marsden, Kurt C., Epstein, Jonathan A., Granato, Michael, Weinstein, Brant M.
Publicado no Development (2015)

Point mutations in the Rpb9-homologous domain of Rpc11 that impair transcription termination by RNA polymerase III

Por Iben, James R., Mazeika, Julie K., Hasson, Sam, Rijal, Keshab, Arimbasseri, Aneeshkumar G., Russo, Amy N., Maraia, Richard J.
Publicado em 2011

RNA Polymerase III Output Is Functionally Linked to tRNA Dimethyl-G26 Modification

Por Arimbasseri, Aneeshkumar G., Blewett, Nathan H., Iben, James R., Lamichhane, Tek N., Cherkasova, Vera, Hafner, Markus, Maraia, Richard J.
Publicado no PLoS Genet (2015)

Lack of tRNA-i6A modification causes mitochondrial-like metabolic deficiency in S. pombe by limiting activity of cytosolic tRNA(Tyr), not mito-tRNA

Por Lamichhane, Tek N., Arimbasseri, Aneeshkumar G., Rijal, Keshab, Iben, James R., Wei, Fan Yan, Tomizawa, Kazuhito, Maraia, Richard J.
Publicado no RNA (2016)

Lack of tRNA Modification Isopentenyl-A37 Alters mRNA Decoding and Causes Metabolic Deficiencies in Fission Yeast

Por Lamichhane, Tek N., Blewett, Nathan H., Crawford, Amanda K., Cherkasova, Vera A., Iben, James R., Begley, Thomas J., Farabaugh, Philip J., Maraia, Richard J.
Publicado em 2013

Erratum for Lamichhane et al., Lack of tRNA Modification Isopentenyl-A37 Alters mRNA Decoding and Causes Metabolic Deficiencies in Fission Yeast

Por Lamichhane, Tek N., Blewett, Nathan H., Crawford, Amanda K., Cherkasova, Vera A., Iben, James R., Begley, Thomas J., Farabaugh, Philip J., Maraia, Richard J.
Publicado no Mol Cell Biol (2015)

Single-Nucleotide-Specific Targeting of the Tf1 Retrotransposon Promoted by the DNA-Binding Protein Sap1 of Schizosaccharomyces pombe

Por Hickey, Anthony, Esnault, Caroline, Majumdar, Anasuya, Chatterjee, Atreyi Ghatak, Iben, James R., McQueen, Philip G., Yang, Andrew X., Mizuguchi, Takeshi, Grewal, Shiv I. S., Levin, Henry L.
Publicado no Genetics (2015)

Comparative whole genome sequencing reveals phenotypic tRNA gene duplication in spontaneous Schizosaccharomyces pombe La mutants

Por Iben, James R., Epstein, Jonathan A., Bayfield, Mark A., Bruinsma, Monique W., Hasson, Samuel, Bacikova, Dagmar, Ahmad, Daniel, Rockwell, Denise, Kittler, Ellen L. W., Zapp, Maria L., Maraia, Richard J.
Publicado em 2011

LEDGF/p75 interacts with mRNA splicing factors and targets HIV-1 integration to highly spliced genes

Por Singh, Parmit Kumar, Plumb, Matthew R., Ferris, Andrea L., Iben, James R., Wu, Xiaolin, Fadel, Hind J., Luke, Brian T., Esnault, Caroline, Poeschla, Eric M., Hughes, Stephen H., Kvaratskhelia, Mamuka, Levin, Henry L.
Publicado no Genes Dev (2015)

Epigenetic regulation of hematopoiesis by DNA methylation

Por Gore, Aniket V, Athans, Brett, Iben, James R, Johnson, Kristin, Russanova, Valya, Castranova, Daniel, Pham, Van N, Butler, Matthew G, Williams-Simons, Lisa, Nichols, James T, Bresciani, Erica, Feldman, Bejamin, Kimmel, Charles B, Liu, Paul P, Weinstein, Brant M
Publicado no eLife (2016)