Dumbbell-PCR: a method to quantify specific small RNA variants with a single nucleotide resolution at terminal sequences

gan Honda, Shozo, Kirino, Yohei
Cyhoeddwyd yn Nucleic Acids Res (2015)

SHOT-RNAs: A novel class of tRNA-derived functional RNAs expressed in hormone-dependent cancers

gan Honda, Shozo, Kirino, Yohei
Cyhoeddwyd yn Mol Cell Oncol (2015)

PIWI Expression and Function in Cancer

gan Suzuki, Ryusuke, Honda, Shozo, Kirino, Yohei
Cyhoeddwyd 2012

Analysis of sDMA modifications of PIWI proteins

gan Honda, Shozo, Kirino, Yoriko, Kirino, Yohei
Cyhoeddwyd yn Methods Mol Biol (2014)

Transfer RNA as a source of small functional RNA

gan Shigematsu, Megumi, Honda, Shozo, Kirino, Yohei
Cyhoeddwyd yn J Mol Biol Mol Imaging (2014)

Selective amplification and sequencing of cyclic phosphate-containing RNAs by the cP-RNA-seq method

gan Honda, Shozo, Morichika, Keisuke, Kirino, Yohei
Cyhoeddwyd yn Nat Protoc (2016)

Genome-wide identification of short 2′,3′-cyclic phosphate-containing RNAs and their regulation in aging

gan Shigematsu, Megumi, Morichika, Keisuke, Kawamura, Takuya, Honda, Shozo, Kirino, Yohei
Cyhoeddwyd yn PLoS Genet (2019)

Four-leaf clover qRT-PCR: A convenient method for selective quantification of mature tRNA

gan Honda, Shozo, Shigematsu, Megumi, Morichika, Keisuke, Telonis, Aristeidis G, Kirino, Yohei
Cyhoeddwyd yn RNA Biol (2015)

The biogenesis pathway of tRNA-derived piRNAs in Bombyx germ cells

gan Honda, Shozo, Kawamura, Takuya, Loher, Phillipe, Morichika, Keisuke, Rigoutsos, Isidore, Kirino, Yohei
Cyhoeddwyd yn Nucleic Acids Res (2017)

Exploration of CCA-added RNAs revealed the expression of mitochondrial non-coding RNAs regulated by CCA-adding enzyme

gan Pawar, Kamlesh, Shigematsu, Megumi, Loher, Phillipe, Honda, Shozo, Rigoutsos, Isidore, Kirino, Yohei
Cyhoeddwyd yn RNA Biol (2019)

YAMAT-seq: an efficient method for high-throughput sequencing of mature transfer RNAs

gan Shigematsu, Megumi, Honda, Shozo, Loher, Phillipe, Telonis, Aristeidis G., Rigoutsos, Isidore, Kirino, Yohei
Cyhoeddwyd yn Nucleic Acids Res (2017)

Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies

gan Telonis, Aristeidis G., Loher, Phillipe, Honda, Shozo, Jing, Yi, Palazzo, Juan, Kirino, Yohei, Rigoutsos, Isidore
Cyhoeddwyd yn Oncotarget (2015)

Mitochondrial protein BmPAPI modulates the length of mature piRNAs

gan Honda, Shozo, Kirino, Yoriko, Maragkakis, Manolis, Alexiou, Panagiotis, Ohtaki, Akashi, Murali, Ramachandran, Mourelatos, Zissimos, Kirino, Yohei
Cyhoeddwyd 2013

Identification and functional analysis of the pre-piRNA 3′ Trimmer in silkworms

gan Izumi, Natsuko, Shoji, Keisuke, Sakaguchi, Yuriko, Honda, Shozo, Kirino, Yohei, Suzuki, Tsutomu, Katsuma, Susumu, Tomari, Yukihide
Cyhoeddwyd yn Cell (2016)

Increasing cell density globally enhances the biogenesis of Piwi-interacting RNAs in Bombyx mori germ cells

gan Honda, Shozo, Loher, Phillipe, Morichika, Keisuke, Shigematsu, Megumi, Kawamura, Takuya, Kirino, Yoriko, Rigoutsos, Isidore, Kirino, Yohei
Cyhoeddwyd yn Sci Rep (2017)

Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers

gan Honda, Shozo, Loher, Phillipe, Shigematsu, Megumi, Palazzo, Juan P., Suzuki, Ryusuke, Imoto, Issei, Rigoutsos, Isidore, Kirino, Yohei
Cyhoeddwyd yn Proc Natl Acad Sci U S A (2015)

RNase κ promotes robust piRNA production by generating 2′,3′-cyclic phosphate-containing precursors

gan Shigematsu, Megumi, Kawamura, Takuya, Morichika, Keisuke, Izumi, Natsuko, Kiuchi, Takashi, Honda, Shozo, Pliatsika, Venetia, Matsubara, Ryuma, Rigoutsos, Isidore, Katsuma, Susumu, Tomari, Yukihide, Kirino, Yohei
Cyhoeddwyd yn Nat Commun (2021)

Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs

gan Londin, Eric, Loher, Phillipe, Telonis, Aristeidis G., Quann, Kevin, Clark, Peter, Jing, Yi, Hatzimichael, Eleftheria, Kirino, Yohei, Honda, Shozo, Lally, Michelle, Ramratnam, Bharat, Comstock, Clay E. S., Knudsen, Karen E., Gomella, Leonard, Spaeth, George L., Hark, Lisa, Katz, L. Jay, Witkiewicz, Agnieszka, Rostami, Abdolmohamad, Jimenez, Sergio A., Hollingsworth, Michael A., Yeh, Jen Jen, Shaw, Chad A., McKenzie, Steven E., Bray, Paul, Nelson, Peter T., Zupo, Simona, Van Roosbroeck, Katrien, Keating, Michael J., Calin, George A., Yeo, Charles, Jimbo, Masaya, Cozzitorto, Joseph, Brody, Jonathan R., Delgrosso, Kathleen, Mattick, John S., Fortina, Paolo, Rigoutsos, Isidore
Cyhoeddwyd yn Proc Natl Acad Sci U S A (2015)