Investigating hospital Mycobacterium chelonae infection using whole genome sequencing and hybrid assembly

gan Gu, Christopher H., Zhao, Chunyu, Hofstaedter, Casey, Tebas, Pablo, Glaser, Laurel, Baldassano, Robert, Bittinger, Kyle, Mattei, Lisa M., Bushman, Frederic D.
Cyhoeddwyd yn PLoS One (2020)

Effect of topical swallowed steroids on the bacterial and fungal esophageal microbiota in eosinophilic esophagitis

gan Benitez, Alain J., Tanes, Ceylan, Mattei, Lisa, Hofstaedter, Casey E., Kim, Dorothy K., Gross, Jonathan, Ruffner, Melanie A., Albenberg, Lindsey, Spergel, Jonathan, Bittinger, Kyle, Muir, Amanda B.
Cyhoeddwyd yn Allergy (2020)

Optimizing methods and dodging pitfalls in microbiome research

gan Kim, Dorothy, Hofstaedter, Casey E., Zhao, Chunyu, Mattei, Lisa, Tanes, Ceylan, Clarke, Erik, Lauder, Abigail, Sherrill-Mix, Scott, Chehoud, Christel, Kelsen, Judith, Conrad, Máire, Collman, Ronald G., Baldassano, Robert, Bushman, Frederic D., Bittinger, Kyle
Cyhoeddwyd yn Microbiome (2017)

An acquired acyltransferase promotes Klebsiella pneumoniae ST258 respiratory infection

gan Ahn, Danielle, Bhushan, Gitanjali, McConville, Thomas H., Annavajhala, Medini K., Kumar Soni, Rajesh, Lung, Tania Wong Fok, Hofstaedter, Casey E., Shah, Shivang S., Chong, Alexander M., Castano, Victor G., Ernst, Robert K., Uhlemann, Anne-Catrin, Prince, Alice
Cyhoeddwyd yn Cell Rep (2021)

Lack of detection of a human placenta microbiome in samples from preterm and term deliveries

gan Leiby, Jacob S., McCormick, Kevin, Sherrill-Mix, Scott, Clarke, Erik L., Kessler, Lyanna R., Taylor, Louis J., Hofstaedter, Casey E., Roche, Aoife M., Mattei, Lisa M., Bittinger, Kyle, Elovitz, Michal A., Leite, Rita, Parry, Samuel, Bushman, Frederic D.
Cyhoeddwyd yn Microbiome (2018)

Whole-Genome Sequencing To Identify Drivers of Carbapenem-Resistant Klebsiella pneumoniae Transmission within and between Regional Long-Term Acute-Care Hospitals

gan Han, Jennifer H., Lapp, Zena, Bushman, Frederic, Lautenbach, Ebbing, Goldstein, Ellie J. C., Mattei, Lisa, Hofstaedter, Casey E., Kim, Dorothy, Nachamkin, Irving, Garrigan, Charles, Jain, Tanya, Bilker, Warren, Wolford, Hannah M., Slayton, Rachel B., Wise, Jacqueleen, Tolomeo, Pam, Snitkin, Evan S.
Cyhoeddwyd yn Antimicrob Agents Chemother (2019)

Microbial Lineages in Sarcoidosis. A Metagenomic Analysis Tailored for Low–Microbial Content Samples

gan Clarke, Erik L., Lauder, Abigail P., Hofstaedter, Casey E., Hwang, Young, Fitzgerald, Ayannah S., Imai, Ize, Biernat, Wojciech, Rękawiecki, Bartłomiej, Majewska, Hanna, Dubaniewicz, Anna, Litzky, Leslie A., Feldman, Michael D., Bittinger, Kyle, Rossman, Milton D., Patterson, Karen C., Bushman, Frederic D., Collman, Ronald G.
Cyhoeddwyd yn Am J Respir Crit Care Med (2018)

T cell dynamics and response of the microbiota after gene therapy to treat X-linked severe combined immunodeficiency

gan Clarke, Erik L., Connell, A. Jesse, Six, Emmanuelle, Kadry, Nadia A., Abbas, Arwa A., Hwang, Young, Everett, John K., Hofstaedter, Casey E., Marsh, Rebecca, Armant, Myriam, Kelsen, Judith, Notarangelo, Luigi D., Collman, Ronald G., Hacein-Bey-Abina, Salima, Kohn, Donald B., Cavazzana, Marina, Fischer, Alain, Williams, David A., Pai, Sung-Yun, Bushman, Frederic D.
Cyhoeddwyd yn Genome Med (2018)

Bacterial colonization reprograms the neonatal gut metabolome

gan Bittinger, Kyle, Zhao, Chunyu, Li, Yun, Ford, Eileen, Friedman, Elliot S., Ni, Josephine, Kulkarni, Chiraag V., Cai, Jingwei, Tian, Yuan, Liu, Qing, Patterson, Andrew D., Sarkar, Debolina, Chan, Siu. H. J., Maranas, Costas, Saha-Shah, Anumita, Lund, Peder, Garcia, Benjamin A., Mattei, Lisa M., Gerber, Jeffrey S., Elovitz, Michal A., Kelly, Andrea, DeRusso, Patricia, Kim, Dorothy, Hofstaedter, Casey E., Goulian, Mark, Li, Hongzhe, Bushman, Frederic D., Zemel, Babette, Wu, Gary D.
Cyhoeddwyd yn Nat Microbiol (2020)

The Consensus from the Mycobacterium avium ssp. paratuberculosis (MAP) Conference 2017

gan Kuenstner, J. Todd, Naser, Saleh, Chamberlin, William, Borody, Thomas, Graham, David Y., McNees, Adrienne, Hermon-Taylor, John, Hermon-Taylor, Amy, Dow, C. Thomas, Thayer, Walter, Biesecker, James, Collins, Michael T., Sechi, Leonardo A., Singh, Shoor Vir, Zhang, Peilin, Shafran, Ira, Weg, Stuart, Telega, Grzegorz, Rothstein, Robert, Oken, Harry, Schimpff, Stephen, Bach, Horacio, Bull, Tim, Grant, Irene, Ellingson, Jay, Dahmen, Heinrich, Lipton, Judith, Gupta, Saurabh, Chaubey, Kundan, Singh, Manju, Agarwal, Prabhat, Kumar, Ashok, Misri, Jyoti, Sohal, Jagdip, Dhama, Kuldeep, Hemati, Zahra, Davis, William, Hier, Michael, Aitken, John, Pierce, Ellen, Parrish, Nicole, Goldberg, Neil, Kali, Maher, Bendre, Sachin, Agrawal, Gaurav, Baldassano, Robert, Linn, Preston, Sweeney, Raymond W., Fecteau, Marie, Hofstaedter, Casey, Potula, Raghava, Timofeeva, Olga, Geier, Steven, John, Kuruvilla, Zayanni, Najah, Malaty, Hoda M., Kahlenborn, Christopher, Kravitz, Amanda, Bulfon, Adriano, Daskalopoulos, George, Mitchell, Hazel, Neilan, Brett, Timms, Verlaine, Cossu, Davide, Mameli, Giuseppe, Angermeier, Paul, Jelic, Tomislav, Goethe, Ralph, Juste, Ramon A., Kuenstner, Lauren
Cyhoeddwyd yn Front Public Health (2017)