PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

по Gordon, Sean P., Levy, Joshua J., Vogel, John P.
Опубликовано в: BMC Genomics (2019)

Multiple feedback loops through cytokinin signaling control stem cell number within the Arabidopsis shoot meristem

по Gordon, Sean P., Chickarmane, Vijay S., Ohno, Carolyn, Meyerowitz, Elliot M.
Опубликовано 2009

Cytokinin signaling as a positional cue for patterning the apical–basal axis of the growing Arabidopsis shoot meristem

по Chickarmane, Vijay S., Gordon, Sean P., Tarr, Paul T., Heisler, Marcus G., Meyerowitz, Elliot M.
Опубликовано 2012

Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium dista...

по Stritt, Christoph, Gordon, Sean P, Wicker, Thomas, Vogel, John P, Roulin, Anne C
Опубликовано в: Genome Biol Evol (2017)

Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon(1)

по Woods, Daniel P., Bednarek, Ryland, Bouché, Frédéric, Gordon, Sean P., Vogel, John P., Garvin, David F., Amasino, Richard M.
Опубликовано в: Plant Physiol (2017)

Generation and Characterization of the Western Regional Research Center Brachypodium T-DNA Insertional Mutant Collection

по Bragg, Jennifer N., Wu, Jiajie, Gordon, Sean P., Guttman, Mara E., Thilmony, Roger, Lazo, Gerard R., Gu, Yong Q., Vogel, John P.
Опубликовано 2012

Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species

по Contreras-Moreira, Bruno, Cantalapiedra, Carlos P., García-Pereira, María J., Gordon, Sean P., Vogel, John P., Igartua, Ernesto, Casas, Ana M., Vinuesa, Pablo
Опубликовано в: Front Plant Sci (2017)

Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei

по Dinh Thi, Vinh Ha, Coriton, Olivier, Le Clainche, Isabelle, Arnaud, Dominique, Gordon, Sean P., Linc, Gabriella, Catalan, Pilar, Hasterok, Robert, Vogel, John P., Jahier, Joseph, Chalhoub, Boulos
Опубликовано в: PLoS One (2016)

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing

по Gordon, Sean P., Tseng, Elizabeth, Salamov, Asaf, Zhang, Jiwei, Meng, Xiandong, Zhao, Zhiying, Kang, Dongwan, Underwood, Jason, Grigoriev, Igor V., Figueroa, Melania, Schilling, Jonathan S., Chen, Feng, Wang, Zhong
Опубликовано в: PLoS One (2015)

Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate

по Wilson, Pip B., Streich, Jared C., Murray, Kevin D., Eichten, Steve R., Cheng, Riyan, Aitken, Nicola C., Spokas, Kurt, Warthmann, Norman, Gordon, Sean P., Vogel, John P., Borevitz, Justin O.
Опубликовано в: Genetics (2019)

Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat

по Henningsen, Eva C., Omidvar, Vahid, Della Coletta, Rafael, Michno, Jean-Michel, Gilbert, Erin, Li, Feng, Miller, Marisa E., Myers, Chad L., Gordon, Sean P., Vogel, John P., Steffenson, Brian J., Kianian, Shahryar F., Hirsch, Cory D., Figueroa, Melania
Опубликовано в: Front Plant Sci (2021)

RDH1 suppresses adiposity by promoting brown adipose adaptation to fasting and re-feeding

по Krois, Charles R., Vuckovic, Marta G., Huang, Priscilla, Zaversnik, Claire, Liu, Conan S., Gibson, Candice E., Wheeler, Madelyn R., Obrochta, Kristin M., Min, Jin H., Herber, Candice B., Thompson, Airlia C., Shah, Ishan D., Gordon, Sean P., Hellerstein, Marc K., Napoli, Joseph L.
Опубликовано в: Cell Mol Life Sci (2019)

A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem

по Rabe, Franziska, Bosch, Jason, Stirnberg, Alexandra, Guse, Tilo, Bauer, Lisa, Seitner, Denise, Rabanal, Fernando A, Czedik-Eysenberg, Angelika, Uhse, Simon, Bindics, Janos, Genenncher, Bianca, Navarrete, Fernando, Kellner, Ronny, Ekker, Heinz, Kumlehn, Jochen, Vogel, John P, Gordon, Sean P, Marcel, Thierry C, Münsterkötter, Martin, Walter, Mathias C, Sieber, Christian MK, Mannhaupt, Gertrud, Güldener, Ulrich, Kahmann, Regine, Djamei, Armin
Опубликовано в: eLife (2016)

The genomic landscape of molecular responses to natural drought stress in Panicum hallii

по Lovell, John T., Jenkins, Jerry, Lowry, David B., Mamidi, Sujan, Sreedasyam, Avinash, Weng, Xiaoyu, Barry, Kerrie, Bonnette, Jason, Campitelli, Brandon, Daum, Chris, Gordon, Sean P., Gould, Billie A., Khasanova, Albina, Lipzen, Anna, MacQueen, Alice, Palacio-Mejía, Juan Diego, Plott, Christopher, Shakirov, Eugene V., Shu, Shengqiang, Yoshinaga, Yuko, Zane, Matt, Kudrna, Dave, Talag, Jason D., Rokhsar, Daniel, Grimwood, Jane, Schmutz, Jeremy, Juenger, Thomas E.
Опубликовано в: Nat Commun (2018)

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure

по Gordon, Sean P., Contreras-Moreira, Bruno, Woods, Daniel P., Des Marais, David L., Burgess, Diane, Shu, Shengqiang, Stritt, Christoph, Roulin, Anne C., Schackwitz, Wendy, Tyler, Ludmila, Martin, Joel, Lipzen, Anna, Dochy, Niklas, Phillips, Jeremy, Barry, Kerrie, Geuten, Koen, Budak, Hikmet, Juenger, Thomas E., Amasino, Richard, Caicedo, Ana L., Goodstein, David, Davidson, Patrick, Mur, Luis A. J., Figueroa, Melania, Freeling, Michael, Catalan, Pilar, Vogel, John P.
Опубликовано в: Nat Commun (2017)

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

по Gordon, Sean P., Contreras-Moreira, Bruno, Levy, Joshua J., Djamei, Armin, Czedik-Eysenberg, Angelika, Tartaglio, Virginia S., Session, Adam, Martin, Joel, Cartwright, Amy, Katz, Andrew, Singan, Vasanth R., Goltsman, Eugene, Barry, Kerrie, Dinh-Thi, Vinh Ha, Chalhoub, Boulos, Diaz-Perez, Antonio, Sancho, Ruben, Lusinska, Joanna, Wolny, Elzbieta, Nibau, Candida, Doonan, John H., Mur, Luis A. J., Plott, Chris, Jenkins, Jerry, Hazen, Samuel P., Lee, Scott J., Shu, Shengqiang, Goodstein, David, Rokhsar, Daniel, Schmutz, Jeremy, Hasterok, Robert, Catalan, Pilar, Vogel, John P.
Опубликовано в: Nat Commun (2020)