PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

od Gordon, Sean P., Levy, Joshua J., Vogel, John P.
Izdano u BMC Genomics (2019)

Multiple feedback loops through cytokinin signaling control stem cell number within the Arabidopsis shoot meristem

od Gordon, Sean P., Chickarmane, Vijay S., Ohno, Carolyn, Meyerowitz, Elliot M.
Izdano 2009

Cytokinin signaling as a positional cue for patterning the apical–basal axis of the growing Arabidopsis shoot meristem

od Chickarmane, Vijay S., Gordon, Sean P., Tarr, Paul T., Heisler, Marcus G., Meyerowitz, Elliot M.
Izdano 2012

Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium dista...

od Stritt, Christoph, Gordon, Sean P, Wicker, Thomas, Vogel, John P, Roulin, Anne C
Izdano u Genome Biol Evol (2017)

Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon(1)

od Woods, Daniel P., Bednarek, Ryland, Bouché, Frédéric, Gordon, Sean P., Vogel, John P., Garvin, David F., Amasino, Richard M.
Izdano u Plant Physiol (2017)

Generation and Characterization of the Western Regional Research Center Brachypodium T-DNA Insertional Mutant Collection

od Bragg, Jennifer N., Wu, Jiajie, Gordon, Sean P., Guttman, Mara E., Thilmony, Roger, Lazo, Gerard R., Gu, Yong Q., Vogel, John P.
Izdano 2012

Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species

od Contreras-Moreira, Bruno, Cantalapiedra, Carlos P., García-Pereira, María J., Gordon, Sean P., Vogel, John P., Igartua, Ernesto, Casas, Ana M., Vinuesa, Pablo
Izdano u Front Plant Sci (2017)

Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei

od Dinh Thi, Vinh Ha, Coriton, Olivier, Le Clainche, Isabelle, Arnaud, Dominique, Gordon, Sean P., Linc, Gabriella, Catalan, Pilar, Hasterok, Robert, Vogel, John P., Jahier, Joseph, Chalhoub, Boulos
Izdano u PLoS One (2016)

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing

od Gordon, Sean P., Tseng, Elizabeth, Salamov, Asaf, Zhang, Jiwei, Meng, Xiandong, Zhao, Zhiying, Kang, Dongwan, Underwood, Jason, Grigoriev, Igor V., Figueroa, Melania, Schilling, Jonathan S., Chen, Feng, Wang, Zhong
Izdano u PLoS One (2015)

Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate

od Wilson, Pip B., Streich, Jared C., Murray, Kevin D., Eichten, Steve R., Cheng, Riyan, Aitken, Nicola C., Spokas, Kurt, Warthmann, Norman, Gordon, Sean P., Vogel, John P., Borevitz, Justin O.
Izdano u Genetics (2019)

Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat

od Henningsen, Eva C., Omidvar, Vahid, Della Coletta, Rafael, Michno, Jean-Michel, Gilbert, Erin, Li, Feng, Miller, Marisa E., Myers, Chad L., Gordon, Sean P., Vogel, John P., Steffenson, Brian J., Kianian, Shahryar F., Hirsch, Cory D., Figueroa, Melania
Izdano u Front Plant Sci (2021)

RDH1 suppresses adiposity by promoting brown adipose adaptation to fasting and re-feeding

od Krois, Charles R., Vuckovic, Marta G., Huang, Priscilla, Zaversnik, Claire, Liu, Conan S., Gibson, Candice E., Wheeler, Madelyn R., Obrochta, Kristin M., Min, Jin H., Herber, Candice B., Thompson, Airlia C., Shah, Ishan D., Gordon, Sean P., Hellerstein, Marc K., Napoli, Joseph L.
Izdano u Cell Mol Life Sci (2019)

A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem

od Rabe, Franziska, Bosch, Jason, Stirnberg, Alexandra, Guse, Tilo, Bauer, Lisa, Seitner, Denise, Rabanal, Fernando A, Czedik-Eysenberg, Angelika, Uhse, Simon, Bindics, Janos, Genenncher, Bianca, Navarrete, Fernando, Kellner, Ronny, Ekker, Heinz, Kumlehn, Jochen, Vogel, John P, Gordon, Sean P, Marcel, Thierry C, Münsterkötter, Martin, Walter, Mathias C, Sieber, Christian MK, Mannhaupt, Gertrud, Güldener, Ulrich, Kahmann, Regine, Djamei, Armin
Izdano u eLife (2016)

The genomic landscape of molecular responses to natural drought stress in Panicum hallii

od Lovell, John T., Jenkins, Jerry, Lowry, David B., Mamidi, Sujan, Sreedasyam, Avinash, Weng, Xiaoyu, Barry, Kerrie, Bonnette, Jason, Campitelli, Brandon, Daum, Chris, Gordon, Sean P., Gould, Billie A., Khasanova, Albina, Lipzen, Anna, MacQueen, Alice, Palacio-Mejía, Juan Diego, Plott, Christopher, Shakirov, Eugene V., Shu, Shengqiang, Yoshinaga, Yuko, Zane, Matt, Kudrna, Dave, Talag, Jason D., Rokhsar, Daniel, Grimwood, Jane, Schmutz, Jeremy, Juenger, Thomas E.
Izdano u Nat Commun (2018)

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure

od Gordon, Sean P., Contreras-Moreira, Bruno, Woods, Daniel P., Des Marais, David L., Burgess, Diane, Shu, Shengqiang, Stritt, Christoph, Roulin, Anne C., Schackwitz, Wendy, Tyler, Ludmila, Martin, Joel, Lipzen, Anna, Dochy, Niklas, Phillips, Jeremy, Barry, Kerrie, Geuten, Koen, Budak, Hikmet, Juenger, Thomas E., Amasino, Richard, Caicedo, Ana L., Goodstein, David, Davidson, Patrick, Mur, Luis A. J., Figueroa, Melania, Freeling, Michael, Catalan, Pilar, Vogel, John P.
Izdano u Nat Commun (2017)

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

od Gordon, Sean P., Contreras-Moreira, Bruno, Levy, Joshua J., Djamei, Armin, Czedik-Eysenberg, Angelika, Tartaglio, Virginia S., Session, Adam, Martin, Joel, Cartwright, Amy, Katz, Andrew, Singan, Vasanth R., Goltsman, Eugene, Barry, Kerrie, Dinh-Thi, Vinh Ha, Chalhoub, Boulos, Diaz-Perez, Antonio, Sancho, Ruben, Lusinska, Joanna, Wolny, Elzbieta, Nibau, Candida, Doonan, John H., Mur, Luis A. J., Plott, Chris, Jenkins, Jerry, Hazen, Samuel P., Lee, Scott J., Shu, Shengqiang, Goodstein, David, Rokhsar, Daniel, Schmutz, Jeremy, Hasterok, Robert, Catalan, Pilar, Vogel, John P.
Izdano u Nat Commun (2020)