PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

gan Gordon, Sean P., Levy, Joshua J., Vogel, John P.
Cyhoeddwyd yn BMC Genomics (2019)

Multiple feedback loops through cytokinin signaling control stem cell number within the Arabidopsis shoot meristem

gan Gordon, Sean P., Chickarmane, Vijay S., Ohno, Carolyn, Meyerowitz, Elliot M.
Cyhoeddwyd 2009

Cytokinin signaling as a positional cue for patterning the apical–basal axis of the growing Arabidopsis shoot meristem

gan Chickarmane, Vijay S., Gordon, Sean P., Tarr, Paul T., Heisler, Marcus G., Meyerowitz, Elliot M.
Cyhoeddwyd 2012

Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium dista...

gan Stritt, Christoph, Gordon, Sean P, Wicker, Thomas, Vogel, John P, Roulin, Anne C
Cyhoeddwyd yn Genome Biol Evol (2017)

Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon(1)

gan Woods, Daniel P., Bednarek, Ryland, Bouché, Frédéric, Gordon, Sean P., Vogel, John P., Garvin, David F., Amasino, Richard M.
Cyhoeddwyd yn Plant Physiol (2017)

Generation and Characterization of the Western Regional Research Center Brachypodium T-DNA Insertional Mutant Collection

gan Bragg, Jennifer N., Wu, Jiajie, Gordon, Sean P., Guttman, Mara E., Thilmony, Roger, Lazo, Gerard R., Gu, Yong Q., Vogel, John P.
Cyhoeddwyd 2012

Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species

gan Contreras-Moreira, Bruno, Cantalapiedra, Carlos P., García-Pereira, María J., Gordon, Sean P., Vogel, John P., Igartua, Ernesto, Casas, Ana M., Vinuesa, Pablo
Cyhoeddwyd yn Front Plant Sci (2017)

Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei

gan Dinh Thi, Vinh Ha, Coriton, Olivier, Le Clainche, Isabelle, Arnaud, Dominique, Gordon, Sean P., Linc, Gabriella, Catalan, Pilar, Hasterok, Robert, Vogel, John P., Jahier, Joseph, Chalhoub, Boulos
Cyhoeddwyd yn PLoS One (2016)

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing

gan Gordon, Sean P., Tseng, Elizabeth, Salamov, Asaf, Zhang, Jiwei, Meng, Xiandong, Zhao, Zhiying, Kang, Dongwan, Underwood, Jason, Grigoriev, Igor V., Figueroa, Melania, Schilling, Jonathan S., Chen, Feng, Wang, Zhong
Cyhoeddwyd yn PLoS One (2015)

Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate

gan Wilson, Pip B., Streich, Jared C., Murray, Kevin D., Eichten, Steve R., Cheng, Riyan, Aitken, Nicola C., Spokas, Kurt, Warthmann, Norman, Gordon, Sean P., Vogel, John P., Borevitz, Justin O.
Cyhoeddwyd yn Genetics (2019)

Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat

gan Henningsen, Eva C., Omidvar, Vahid, Della Coletta, Rafael, Michno, Jean-Michel, Gilbert, Erin, Li, Feng, Miller, Marisa E., Myers, Chad L., Gordon, Sean P., Vogel, John P., Steffenson, Brian J., Kianian, Shahryar F., Hirsch, Cory D., Figueroa, Melania
Cyhoeddwyd yn Front Plant Sci (2021)

RDH1 suppresses adiposity by promoting brown adipose adaptation to fasting and re-feeding

gan Krois, Charles R., Vuckovic, Marta G., Huang, Priscilla, Zaversnik, Claire, Liu, Conan S., Gibson, Candice E., Wheeler, Madelyn R., Obrochta, Kristin M., Min, Jin H., Herber, Candice B., Thompson, Airlia C., Shah, Ishan D., Gordon, Sean P., Hellerstein, Marc K., Napoli, Joseph L.
Cyhoeddwyd yn Cell Mol Life Sci (2019)

A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem

gan Rabe, Franziska, Bosch, Jason, Stirnberg, Alexandra, Guse, Tilo, Bauer, Lisa, Seitner, Denise, Rabanal, Fernando A, Czedik-Eysenberg, Angelika, Uhse, Simon, Bindics, Janos, Genenncher, Bianca, Navarrete, Fernando, Kellner, Ronny, Ekker, Heinz, Kumlehn, Jochen, Vogel, John P, Gordon, Sean P, Marcel, Thierry C, Münsterkötter, Martin, Walter, Mathias C, Sieber, Christian MK, Mannhaupt, Gertrud, Güldener, Ulrich, Kahmann, Regine, Djamei, Armin
Cyhoeddwyd yn eLife (2016)

The genomic landscape of molecular responses to natural drought stress in Panicum hallii

gan Lovell, John T., Jenkins, Jerry, Lowry, David B., Mamidi, Sujan, Sreedasyam, Avinash, Weng, Xiaoyu, Barry, Kerrie, Bonnette, Jason, Campitelli, Brandon, Daum, Chris, Gordon, Sean P., Gould, Billie A., Khasanova, Albina, Lipzen, Anna, MacQueen, Alice, Palacio-Mejía, Juan Diego, Plott, Christopher, Shakirov, Eugene V., Shu, Shengqiang, Yoshinaga, Yuko, Zane, Matt, Kudrna, Dave, Talag, Jason D., Rokhsar, Daniel, Grimwood, Jane, Schmutz, Jeremy, Juenger, Thomas E.
Cyhoeddwyd yn Nat Commun (2018)

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure

gan Gordon, Sean P., Contreras-Moreira, Bruno, Woods, Daniel P., Des Marais, David L., Burgess, Diane, Shu, Shengqiang, Stritt, Christoph, Roulin, Anne C., Schackwitz, Wendy, Tyler, Ludmila, Martin, Joel, Lipzen, Anna, Dochy, Niklas, Phillips, Jeremy, Barry, Kerrie, Geuten, Koen, Budak, Hikmet, Juenger, Thomas E., Amasino, Richard, Caicedo, Ana L., Goodstein, David, Davidson, Patrick, Mur, Luis A. J., Figueroa, Melania, Freeling, Michael, Catalan, Pilar, Vogel, John P.
Cyhoeddwyd yn Nat Commun (2017)

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

gan Gordon, Sean P., Contreras-Moreira, Bruno, Levy, Joshua J., Djamei, Armin, Czedik-Eysenberg, Angelika, Tartaglio, Virginia S., Session, Adam, Martin, Joel, Cartwright, Amy, Katz, Andrew, Singan, Vasanth R., Goltsman, Eugene, Barry, Kerrie, Dinh-Thi, Vinh Ha, Chalhoub, Boulos, Diaz-Perez, Antonio, Sancho, Ruben, Lusinska, Joanna, Wolny, Elzbieta, Nibau, Candida, Doonan, John H., Mur, Luis A. J., Plott, Chris, Jenkins, Jerry, Hazen, Samuel P., Lee, Scott J., Shu, Shengqiang, Goodstein, David, Rokhsar, Daniel, Schmutz, Jeremy, Hasterok, Robert, Catalan, Pilar, Vogel, John P.
Cyhoeddwyd yn Nat Commun (2020)