Marine systems biology

Por Tonon, Thierry, Eveillard, Damien
Publicado no Front Genet (2015)

Hybrid modeling of biological networks: mixing temporal and qualitative biological properties

Por Fromentin, Jonathan, Eveillard, Damien, Roux, Olivier
Publicado em 2010

Integrating Quantitative Knowledge into a Qualitative Gene Regulatory Network

Por Bourdon, Jérémie, Eveillard, Damien, Siegel, Anne
Publicado em 2011

On the Power of Uncertainties in Microbial System Modeling: No Need To Hide Them Anymore

Por Delahaye, Benoit, Eveillard, Damien, Bouskill, Nicholas
Publicado no mSystems (2017)

A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems

Por Budinich, Marko, Bourdon, Jérémie, Larhlimi, Abdelhalim, Eveillard, Damien
Publicado no PLoS One (2017)

Gene Expression Analysis of Zobellia galactanivorans during the Degradation of Algal Polysaccharides Reveals both Substrate-Specific and Shared Transcriptome-Wide Responses

Por Thomas, François, Bordron, Philippe, Eveillard, Damien, Michel, Gurvan
Publicado no Front Microbiol (2017)

Beyond the Black Queen Hypothesis

Por Mas, Alix, Jamshidi, Shahrad, Lagadeuc, Yvan, Eveillard, Damien, Vandenkoornhuyse, Philippe
Publicado no ISME J (2016)

Deciphering transcriptional regulations coordinating the response to environmental changes

Por Acuña, Vicente, Aravena, Andrés, Guziolowski, Carito, Eveillard, Damien, Siegel, Anne, Maass, Alejandro
Publicado no BMC Bioinformatics (2016)

Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach

Por Bordron, Philippe, Latorre, Mauricio, Cortés, Maria‐Paz, González, Mauricio, Thiele, Sven, Siegel, Anne, Maass, Alejandro, Eveillard, Damien
Publicado no Microbiologyopen (2015)

Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks

Por Laniau, Julie, Frioux, Clémence, Nicolas, Jacques, Baroukh, Caroline, Cortes, Maria-Paz, Got, Jeanne, Trottier, Camille, Eveillard, Damien, Siegel, Anne
Publicado no PeerJ (2017)

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks

Por Prigent, Sylvain, Frioux, Clémence, Dittami, Simon M., Thiele, Sven, Larhlimi, Abdelhalim, Collet, Guillaume, Gutknecht, Fabien, Got, Jeanne, Eveillard, Damien, Bourdon, Jérémie, Plewniak, Frédéric, Tonon, Thierry, Siegel, Anne
Publicado no PLoS Comput Biol (2017)

Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience

Por Mandakovic, Dinka, Rojas, Claudia, Maldonado, Jonathan, Latorre, Mauricio, Travisany, Dante, Delage, Erwan, Bihouée, Audrey, Jean, Géraldine, Díaz, Francisca P., Fernández-Gómez, Beatriz, Cabrera, Pablo, Gaete, Alexis, Latorre, Claudio, Gutiérrez, Rodrigo A., Maass, Alejandro, Cambiazo, Verónica, Navarrete, Sergio A., Eveillard, Damien, González, Mauricio
Publicado no Sci Rep (2018)

Plankton networks driving carbon export in the oligotrophic ocean

Por Guidi, Lionel, Chaffron, Samuel, Bittner, Lucie, Eveillard, Damien, Larhlimi, Abdelhalim, Roux, Simon, Darzi, Youssef, Audic, Stephane, Berline, Léo, Brum, Jennifer, Coelho, Luis Pedro, Espinoza, Julio Cesar Ignacio, Malviya, Shruti, Sunagawa, Shinichi, Dimier, Céline, Kandels-Lewis, Stefanie, Picheral, Marc, Poulain, Julie, Searson, Sarah, Stemmann, Lars, Not, Fabrice, Hingamp, Pascal, Speich, Sabrina, Follows, Mick, Karp-Boss, Lee, Boss, Emmanuel, Ogata, Hiroyuki, Pesant, Stephane, Weissenbach, Jean, Wincker, Patrick, Acinas, Silvia G., Bork, Peer, de Vargas, Colomban, Iudicone, Daniele, Sullivan, Matthew B., Raes, Jeroen, Karsenti, Eric, Bowler, Chris, Gorsky, Gabriel
Publicado no Nature (2016)