Computational methods and opportunities for phosphorylation network medicine

Por Chen, Yian Ann, Eschrich, Steven A.
Publicado no Transl Cancer Res (2014)

Characteristics and Validation Techniques for PCA-Based Gene-Expression Signatures

Por Berglund, Anders E., Welsh, Eric A., Eschrich, Steven A.
Publicado no Int J Genomics (2017)

Integrating Biological Covariates into Gene Expression-Based Predictors of Radiation Sensitivity

Por Kamath, Vidya P., Torres-Roca, Javier F., Eschrich, Steven A.
Publicado no Int J Genomics (2017)

Iterative rank-order normalization of gene expression microarray data

Por Welsh, Eric A, Eschrich, Steven A, Berglund, Anders E, Fenstermacher, David A
Publicado em 2013

Methods for Investigation of Targeted Kinase Inhibitor Therapy using Chemical Proteomics and Phosphorylation Profiling

Por Fang, Bin, Haura, Eric B., Smalley, Keiran S., Eschrich, Steven A., Koomen, John M.
Publicado em 2010

An Interactive Resource to Probe Genetic Diversity and Estimated Ancestry in Cancer Cell Lines

Por Dutil, Julie, Chen, Zhihua, Monteiro, Alvaro N., Teer, Jamie K., Eschrich, Steven A.
Publicado no Cancer Res (2019)

Peritumoral and intratumoral radiomic features predict survival outcomes among patients diagnosed in lung cancer screening

Por Pérez-Morales, Jaileene, Tunali, Ilke, Stringfield, Olya, Eschrich, Steven A., Balagurunathan, Yoganand, Gillies, Robert J., Schabath, Matthew B.
Publicado no Sci Rep (2020)

Evaluating somatic tumor mutation detection without matched normal samples

Por Teer, Jamie K., Zhang, Yonghong, Chen, Lu, Welsh, Eric A., Cress, W. Douglas, Eschrich, Steven A., Berglund, Anders E.
Publicado no Hum Genomics (2017)

Phosphoproteomics reveals MAPK inhibitors enhance MET- and EGFR-driven AKT signaling in KRAS-mutant lung cancer

Por Kim, Jae-Young, Welsh, Eric A., Fang, Bin, Bai, Yun, Kinose, Fumi, Eschrich, Steven A., Koomen, John M., Haura, Eric B.
Publicado no Mol Cancer Res (2016)

Expanding epigenomics to archived FFPE tissues: An evaluation of DNA repair methodologies

Por Siegel, Erin M, Berglund, Anders E., Riggs, Bridget M, Eschrich, Steven A., Putney, Ryan M., Ajidahun, Abidemi O., Coppola, Domenico, Shibata, David
Publicado no Cancer Epidemiol Biomarkers Prev (2014)

Association between computed tomographic features and KRAS mutations in patients with stage I lung adenocarcinoma and their prognostic value

Por Wang, Hua, Schabath, Matthew B., Liu, Ying, Stringfield, Olya, Balagurunathan, Yoganand, Heine, John J., Eschrich, Steven A., Ye, Zhaoxiang, Gillies, Robert J.
Publicado no Clin Lung Cancer (2015)

Differences in Patient Outcomes of Prevalence, Interval, and Screen-Detected Lung Cancers in the CT Arm of the National Lung Screening Trial

Por Schabath, Matthew B., Massion, Pierre P., Thompson, Zachary J., Eschrich, Steven A., Balagurunathan, Yoganand, Goldof, Dmitry, Aberle, Denise R., Gillies, Robert J.
Publicado no PLoS One (2016)

APOSTL: An Interactive Galaxy Pipeline for Reproducible Analysis of Affinity Proteomics Data

Por Kuenzi, Brent M., Borne, Adam L., Li, Jiannong, Haura, Eric B., Eschrich, Steven A., Koomen, John M., Rix, Uwe, Stewart, Paul A.
Publicado no J Proteome Res (2016)

Use of the Total Cancer Care System to Enrich Screening for CD30-Positive Solid Tumors for Patient Enrollment Into a Brentuximab Vedotin Clinical Trial: A Pilot Study to Evaluate F...

Por Li, Bin, Eschrich, Steven A, Berglund, Anders, Mitchell, Melissa, Fenstermacher, David, Danaee, Hadi, Dai, Hongyue, Sullivan, Daniel, Trepicchio, William L, Dalton, William S
Publicado no JMIR Res Protoc (2017)

EPB41L5 is Associated With the Metastatic Potential of Low-grade Pancreatic Neuroendocrine Tumors

Por SALLER, JAMES, SEYDAFKAN, SHABNAM, SHAHID, MOHAMMAD, GADARA, MANOJ, CIVES, MAURO, ESCHRICH, STEVEN A., BOULWARE, DAVID, STROSBERG, JONATHAN R., AEJAZ, NASIR, COPPOLA, DOMENICO
Publicado no Cancer Genomics Proteomics (2019)

Differences between colon cancer primaries and metastases utilizing a molecular assay for tumor radiosensitivity suggest implications for potential oligometastatic SBRT patient sel...

Por Ahmed, Kamran A., Fulp, William J., Berglund, Anders E., Hoffe, Sarah E., Dilling, Thomas J., Eschrich, Steven A., Shridhar, Ravi, Torres-Roca, Javier F.
Publicado no Int J Radiat Oncol Biol Phys (2015)

Knockdown of CSE1L Gene in Colorectal Cancer Reduces Tumorigenesis in Vitro

Por Pimiento, Jose M., Neill, Kevin G., Henderson-Jackson, Evita, Eschrich, Steven A., Chen, Dung-Tsa, Husain, Kazim, Shibata, David, Coppola, Domenico, Malafa, Mokenge P.
Publicado no Am J Pathol (2016)

GMSimpute: a generalized two-step Lasso approach to impute missing values in label-free mass spectrum analysis

Por Li, Qian, Fisher, Kate, Meng, Wenjun, Fang, Bin, Welsh, Eric, Haura, Eric B, Koomen, John M, Eschrich, Steven A, Fridley, Brooke L, Chen, Y Ann
Publicado no Bioinformatics (2020)

Activity-Based Proteomics Reveals Heterogeneous Kinome and ATP-Binding Proteome Responses to MEK Inhibition in KRAS Mutant Lung Cancer

Por Kim, Jae-Young, Stewart, Paul A., Borne, Adam L., Fang, Bin, Welsh, Eric A., Chen, Yian Ann, Eschrich, Steven A., Koomen, John M., Haura, Eric B.
Publicado no Proteomes (2016)

A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma

Por Stewart, Paul A., Parapatics, Katja, Welsh, Eric A., Müller, André C., Cao, Haoyun, Fang, Bin, Koomen, John M., Eschrich, Steven A., Bennett, Keiryn L., Haura, Eric B.
Publicado no PLoS One (2015)