CIPR: a web-based R/shiny app and R package to annotate cell clusters in single cell RNA sequencing experiments

af Ekiz, H. Atakan, Conley, Christopher J., Stephens, W. Zac, O’Connell, Ryan M.
Udgivet i BMC Bioinformatics (2020)

Inhibition of SHP-1 expands the repertoire of antitumor T cells available to respond to immune checkpoint blockade.

af Snook, Jeremy P., Soedel, Ashleigh J., Ekiz, H. Atakan, O’Connell, Ryan M., Williams, Matthew A.
Udgivet i Cancer Immunol Res (2020)

Maternal schistosomiasis impairs offspring Interleukin-4 production and B cell expansion

af Cortés-Selva, Diana, Gibbs, Lisa, Ready, Andrew, Ekiz, H. Atakan, O’Connell, Ryan, Rajwa, Bartek, Fairfax, Keke C.
Udgivet i PLoS Pathog (2021)

Single-Cell RNA Sequencing Reveals the Diversity of the Immunological Landscape following Central Nervous System Infection by a Murine Coronavirus

af Syage, Amber R., Ekiz, H. Atakan, Skinner, Dominic D., Stone, Colleen, O’Connell, Ryan M., Lane, Thomas E.
Udgivet i J Virol (2020)

MicroRNA-155 coordinates the immunological landscape within murine melanoma and correlates with immunity in human cancers

af Ekiz, H. Atakan, Huffaker, Thomas B., Grossmann, Allie H., Stephens, W. Zac, Williams, Matthew A., Round, June L., O’Connell, Ryan M.
Udgivet i JCI Insight (2019)

Microglia influence host defense, disease, and repair following murine coronavirus infection of the central nervous system

af Mangale, Vrushali, Syage, Amber R., Ekiz, H. Atakan, Skinner, Dominic D., Cheng, Yuting, Stone, Colleen L., Brown, R. Marshall, O'Connell, Ryan M., Green, Kim N., Lane, Thomas E.
Udgivet i Glia (2020)

T cell-expressed microRNA-155 reduces lifespan in a mouse model of age-related chronic inflammation

af Ekiz, H. Atakan, Ramstead, Andrew G., Lee, Soh-Hyun, Nelson, Morgan C., Bauer, Kaylyn M., Wallace, Jared A., Hu, Ruozhen, Round, June L., Rutter, Jared, Drummond, Micah J., Rao, Dinesh S., O’Connell, Ryan M.
Udgivet i J Immunol (2020)

Mitochondrial Pyruvate Carrier 1 Promotes Peripheral T Cell Homeostasis through Metabolic Regulation of Thymic Development

af Ramstead, Andrew G., Wallace, Jared A., Lee, Soh-Hyun, Bauer, Kaylyn M., Tang, William W., Ekiz, H. Atakan, Lane, Thomas E., Cluntun, Ahmad A., Bettini, Matthew L., Round, June L., Rutter, Jared, O’Connell, Ryan M.
Udgivet i Cell Rep (2020)

T cell-mediated regulation of the microbiota protects against obesity

af Petersen, Charisse, Bell, Rickesha, Klag, Kendra A., Lee, Soh-Hyun, Soto, Raymond, Ghazaryan, Arevik, Buhrke, Kaitlin, Ekiz, H. Atakan, Ost, Kyla S., Boudina, Sihem, O’Connell, Ryan M., Cox, James E., Villanueva, Claudio J., Stephens, W. Zac, Round, June L.
Udgivet i Science (2019)

A Stat1 bound enhancer promotes Nampt expression and function within tumor associated macrophages

af Huffaker, Thomas B., Ekiz, H. Atakan, Barba, Cindy, Lee, Soh-Hyun, Runtsch, Marah C., Nelson, Morgan C., Bauer, Kaylyn M., Tang, William W., Mosbruger, Timothy L., Cox, James E., Round, June L., Voth, Warren P., O’Connell, Ryan M.
Udgivet i Nat Commun (2021)