Checks and balances? DNA replication and the cell cycle in Plasmodium

by Matthews, Holly, Duffy, Craig W., Merrick, Catherine J.
Published in Parasit Vectors (2018)

Genome‐wide mosaicism in divergence between zoonotic malaria parasite subpopulations with separate sympatric transmission cycles

by Divis, Paul C. S., Duffy, Craig W., Kadir, Khamisah A., Singh, Balbir, Conway, David J.
Published in Mol Ecol (2018)

Applying next-generation sequencing to track falciparum malaria in sub-Saharan Africa

by Tessema, Sofonias K., Raman, Jaishree, Duffy, Craig W., Ishengoma, Deus S., Amambua-Ngwa, Alfred, Greenhouse, Bryan
Published in Malar J (2019)

Widespread distribution of Plasmodium vivax malaria in Mauritania on the interface of the Maghreb and West Africa

by Ba, Hampâté, Duffy, Craig W., Ahouidi, Ambroise D., Deh, Yacine Boubou, Diallo, Mamadou Yero, Tandia, Abderahmane, Conway, David J.
Published in Malar J (2016)

Human and Animal Trypanosomes in Côte d'Ivoire Form a Single Breeding Population

by Capewell, Paul, Cooper, Anneli, Duffy, Craig W., Tait, Andy, Turner, C. Michael R., Gibson, Wendy, Mehlitz, Dieter, MacLeod, Annette
Published 2013

Microsatellite genotyping and genome-wide single nucleotide polymorphism-based indices of Plasmodium falciparum diversity within clinical infections

by Murray, Lee, Mobegi, Victor A., Duffy, Craig W., Assefa, Samuel A., Kwiatkowski, Dominic P., Laman, Eugene, Loua, Kovana M., Conway, David J.
Published in Malar J (2016)

Admixture in Humans of Two Divergent Plasmodium knowlesi Populations Associated with Different Macaque Host Species

by Divis, Paul C. S., Singh, Balbir, Anderios, Fread, Hisam, Shamilah, Matusop, Asmad, Kocken, Clemens H., Assefa, Samuel A., Duffy, Craig W., Conway, David J.
Published in PLoS Pathog (2015)

Population Genetics of Trypanosoma brucei rhodesiense: Clonality and Diversity within and between Foci

by Duffy, Craig W., MacLean, Lorna, Sweeney, Lindsay, Cooper, Anneli, Turner, C. Michael R., Tait, Andy, Sternberg, Jeremy, Morrison, Liam J., MacLeod, Annette
Published 2013

Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution

by Duffy, Craig W., Ba, Hampate, Assefa, Samuel, Ahouidi, Ambroise D., Deh, Yacine B., Tandia, Abderahmane, Kirsebom, Freja C. M., Kwiatkowski, Dominic P., Conway, David J.
Published in Mol Ecol (2017)

Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity

by Duffy, Craig W., Assefa, Samuel A., Abugri, James, Amoako, Nicholas, Owusu-Agyei, Seth, Anyorigiya, Thomas, MacInnis, Bronwyn, Kwiatkowski, Dominic P., Conway, David J., Awandare, Gordon A.
Published in BMC Genomics (2015)

Schizont transcriptome variation among clinical isolates and laboratory-adapted clones of the malaria parasite Plasmodium falciparum

by Tarr, Sarah J., Díaz-Ingelmo, Ofelia, Stewart, Lindsay B., Hocking, Suzanne E., Murray, Lee, Duffy, Craig W., Otto, Thomas D., Chappell, Lia, Rayner, Julian C., Awandare, Gordon A., Conway, David J.
Published in BMC Genomics (2018)

Multi-locus genotyping reveals established endemicity of a geographically distinct Plasmodium vivax population in Mauritania, West Africa

by Ba, Hampate, Auburn, Sarah, Jacob, Christopher G., Goncalves, Sonia, Duffy, Craig W., Stewart, Lindsay B., Price, Ric N., Deh, Yacine Boubou, Diallo, Mamadou Yero, Tandia, Abderahmane, Kwiatkowski, Dominic P., Conway, David J.
Published in PLoS Negl Trop Dis (2020)

Genome-Wide Analysis of Selection on the Malaria Parasite Plasmodium falciparum in West African Populations of Differing Infection Endemicity

by Mobegi, Victor A., Duffy, Craig W., Amambua-Ngwa, Alfred, Loua, Kovana M., Laman, Eugene, Nwakanma, Davis C., MacInnis, Bronwyn, Aspeling-Jones, Harvey, Murray, Lee, Clark, Taane G., Kwiatkowski, Dominic P., Conway, David J.
Published 2014

Multi-population genomic analysis of malaria parasites indicates local selection and differentiation at the gdv1 locus regulating sexual development

by Duffy, Craig W., Amambua-Ngwa, Alfred, Ahouidi, Ambroise D., Diakite, Mahamadou, Awandare, Gordon A., Ba, Hampate, Tarr, Sarah J., Murray, Lee, Stewart, Lindsay B., D’Alessandro, Umberto, Otto, Thomas D., Kwiatkowski, Dominic P., Conway, David J.
Published in Sci Rep (2018)

Variant antigen diversity in Trypanosoma vivax is not driven by recombination

by Silva Pereira, Sara, de Almeida Castilho Neto, Kayo J. G., Duffy, Craig W., Richards, Peter, Noyes, Harry, Ogugo, Moses, Rogério André, Marcos, Bengaly, Zakaria, Kemp, Steve, Teixeira, Marta M. G., Machado, Rosangela Z., Jackson, Andrew P.
Published in Nat Commun (2020)

Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi

by Assefa, Samuel, Lim, Caeul, Preston, Mark D., Duffy, Craig W., Nair, Mridul B., Adroub, Sabir A., Kadir, Khamisah A., Goldberg, Jonathan M., Neafsey, Daniel E., Divis, Paul, Clark, Taane G., Duraisingh, Manoj T., Conway, David J., Pain, Arnab, Singh, Balbir
Published in Proc Natl Acad Sci U S A (2015)

Changes in Malaria Parasite Drug Resistance in an Endemic Population Over a 25-Year Period With Resulting Genomic Evidence of Selection

by Nwakanma, Davis C., Duffy, Craig W., Amambua-Ngwa, Alfred, Oriero, Eniyou C., Bojang, Kalifa A., Pinder, Margaret, Drakeley, Chris J., Sutherland, Colin J., Milligan, Paul J., MacInnis, Bronwyn, Kwiatkowski, Dominic P., Clark, Taane G., Greenwood, Brian M., Conway, David J.
Published 2014

Long read assemblies of geographically dispersed Plasmodium falciparum isolates reveal highly structured subtelomeres

by Otto, Thomas D., Böhme, Ulrike, Sanders, Mandy, Reid, Adam, Bruske, Ellen I., Duffy, Craig W., Bull, Pete C., Pearson, Richard D., Abdi, Abdirahman, Dimonte, Sandra, Stewart, Lindsay B., Campino, Susana, Kekre, Mihir, Hamilton, William L., Claessens, Antoine, Volkman, Sarah K., Ndiaye, Daouda, Amambua-Ngwa, Alfred, Diakite, Mahamadou, Fairhurst, Rick M., Conway, David J., Franck, Matthias, Newbold, Chris I., Berriman, Matt
Published in Wellcome Open Res (2018)