Granger causality vs. dynamic Bayesian network inference: a comparative study

Por Zou, Cunlu, Denby, Katherine J, Feng, Jianfeng
Publicado em 2009

OXI1 protein kinase is required for plant immunity against Pseudomonas syringae in Arabidopsis

Por Petersen, Lindsay N., Ingle, Robert A., Knight, Marc R., Denby, Katherine J.
Publicado em 2009

Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks

Por Penfold, Christopher A., Buchanan-Wollaston, Vicky, Denby, Katherine J., Wild, David L.
Publicado em 2012

Insect Gallers and Their Plant Hosts: From Omics Data to Systems Biology

Por Oates, Caryn N., Denby, Katherine J., Myburg, Alexander A., Slippers, Bernard, Naidoo, Sanushka
Publicado no Int J Mol Sci (2016)

A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series

Por Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin, Borgwardt, Karsten M.
Publicado em 2010

Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity

Por Atwell, Susanna, Corwin, Jason A., Soltis, Nicole E., Subedy, Anushryia, Denby, Katherine J., Kliebenstein, Daniel J.
Publicado no Front Microbiol (2015)

Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco

Por Alexandersson, Erik, Becker, John VW, Jacobson, Dan, Nguema-Ona, Eric, Steyn, Cobus, Denby, Katherine J, Vivier, Melané A
Publicado em 2011

R/BHC: fast Bayesian hierarchical clustering for microarray data

Por Savage, Richard S, Heller, Katherine, Xu, Yang, Ghahramani, Zoubin, Truman, William M, Grant, Murray, Denby, Katherine J, Wild, David L
Publicado em 2009

Jasmonate signalling drives time‐of‐day differences in susceptibility of Arabidopsis to the fungal pathogen Botrytis cinerea

Por Ingle, Robert A., Stoker, Claire, Stone, Wendy, Adams, Nicolette, Smith, Rob, Grant, Murray, Carré, Isabelle, Roden, Laura C., Denby, Katherine J.
Publicado no Plant J (2015)

Increased Resistance to Biotrophic Pathogens in the Arabidopsis Constitutive Induced Resistance 1 Mutant Is EDS1 and PAD4-Dependent and Modulated by Environmental Temperature

Por Carstens, Maryke, McCrindle, Tyronne K., Adams, Nicolette, Diener, Anastashia, Guzha, Delroy T., Murray, Shane L., Parker, Jane E., Denby, Katherine J., Ingle, Robert A.
Publicado em 2014

Conserved Noncoding Sequences Highlight Shared Components of Regulatory Networks in Dicotyledonous Plants([W])

Por Baxter, Laura, Jironkin, Aleksey, Hickman, Richard, Moore, Jay, Barrington, Christopher, Krusche, Peter, Dyer, Nigel P., Buchanan-Wollaston, Vicky, Tiskin, Alexander, Beynon, Jim, Denby, Katherine, Ott, Sascha
Publicado em 2012

Wigwams: identifying gene modules co-regulated across multiple biological conditions

Por Polanski, Krzysztof, Rhodes, Johanna, Hill, Claire, Zhang, Peijun, Jenkins, Dafyd J., Kiddle, Steven J., Jironkin, Aleksey, Beynon, Jim, Buchanan-Wollaston, Vicky, Ott, Sascha, Denby, Katherine J.
Publicado em 2014

MEDIATOR25 Acts as an Integrative Hub for the Regulation of Jasmonate-Responsive Gene Expression in Arabidopsis(1)([C])([W])

Por Çevik, Volkan, Kidd, Brendan N., Zhang, Peijun, Hill, Claire, Kiddle, Steve, Denby, Katherine J., Holub, Eric B., Cahill, David M., Manners, John M., Schenk, Peer M., Beynon, Jim, Kazan, Kemal
Publicado em 2012

Reassess the t Test: Interact with All Your Data via ANOVA

Por Brady, Siobhan M., Burow, Meike, Busch, Wolfgang, Carlborg, Örjan, Denby, Katherine J., Glazebrook, Jane, Hamilton, Eric S., Harmer, Stacey L., Haswell, Elizabeth S., Maloof, Julin N., Springer, Nathan M., Kliebenstein, Daniel J.
Publicado no Plant Cell (2015)

A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves

Por Hickman, Richard, Hill, Claire, Penfold, Christopher A, Breeze, Emily, Bowden, Laura, Moore, Jonathan D, Zhang, Peijun, Jackson, Alison, Cooke, Emma, Bewicke-Copley, Findlay, Mead, Andrew, Beynon, Jim, Wild, David L, Denby, Katherine J, Ott, Sascha, Buchanan-Wollaston, Vicky
Publicado em 2013

Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network

Por Hickman, Richard, Van Verk, Marcel C., Van Dijken, Anja J.H., Mendes, Marciel Pereira, Vroegop-Vos, Irene A., Caarls, Lotte, Steenbergen, Merel, Van der Nagel, Ivo, Wesselink, Gert Jan, Jironkin, Aleksey, Talbot, Adam, Rhodes, Johanna, De Vries, Michel, Schuurink, Robert C., Denby, Katherine, Pieterse, Corné M.J., Van Wees, Saskia C.M.
Publicado no Plant Cell (2017)

High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation([C])([W])([OA])

Por Breeze, Emily, Harrison, Elizabeth, McHattie, Stuart, Hughes, Linda, Hickman, Richard, Hill, Claire, Kiddle, Steven, Kim, Youn-sung, Penfold, Christopher A., Jenkins, Dafyd, Zhang, Cunjin, Morris, Karl, Jenner, Carol, Jackson, Stephen, Thomas, Brian, Tabrett, Alexandra, Legaie, Roxane, Moore, Jonathan D., Wild, David L., Ott, Sascha, Rand, David, Beynon, Jim, Denby, Katherine, Mead, Andrew, Buchanan-Wollaston, Vicky
Publicado em 2011

Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tom...

Por Lewis, Laura A., Polanski, Krzysztof, de Torres-Zabala, Marta, Jayaraman, Siddharth, Bowden, Laura, Moore, Jonathan, Penfold, Christopher A., Jenkins, Dafyd J., Hill, Claire, Baxter, Laura, Kulasekaran, Satish, Truman, William, Littlejohn, George, Prusinska, Justyna, Mead, Andrew, Steinbrenner, Jens, Hickman, Richard, Rand, David, Wild, David L., Ott, Sascha, Buchanan-Wollaston, Vicky, Smirnoff, Nick, Beynon, Jim, Denby, Katherine, Grant, Murray
Publicado no Plant Cell (2015)

Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis([C])([W])

Por Windram, Oliver, Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard, Cooke, Emma, Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily, Kiddle, Steven J., Rhodes, Johanna, Atwell, Susanna, Kliebenstein, Daniel J., Kim, Youn-sung, Stegle, Oliver, Borgwardt, Karsten, Zhang, Cunjin, Tabrett, Alex, Legaie, Roxane, Moore, Jonathan, Finkenstadt, Bärbel, Wild, David L., Mead, Andrew, Rand, David, Beynon, Jim, Ott, Sascha, Buchanan-Wollaston, Vicky, Denby, Katherine J.
Publicado em 2012

Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis

Por Bechtold, Ulrike, Penfold, Christopher A., Jenkins, Dafyd J., Legaie, Roxane, Moore, Jonathan D., Lawson, Tracy, Matthews, Jack S.A., Vialet-Chabrand, Silvere R.M., Baxter, Laura, Subramaniam, Sunitha, Hickman, Richard, Florance, Hannah, Sambles, Christine, Salmon, Deborah L., Feil, Regina, Bowden, Laura, Hill, Claire, Baker, Neil R., Lunn, John E., Finkenstädt, Bärbel, Mead, Andrew, Buchanan-Wollaston, Vicky, Beynon, Jim, Rand, David A., Wild, David L., Denby, Katherine J., Ott, Sascha, Smirnoff, Nicholas, Mullineaux, Philip M.
Publicado no Plant Cell (2016)