Collaborative Annotation Redefines Gene Sets for Crucial Phytopathogens

di Pedro, Helder, Yates, Andrew D., Kersey, Paul J., De Silva, Nishadi H.
Pubblicato in Front Microbiol (2019)

Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data

di Page, Andrew J., De Silva, Nishadi, Hunt, Martin, Quail, Michael A., Parkhill, Julian, Harris, Simon R., Otto, Thomas D., Keane, Jacqueline A.
Pubblicato in Microb Genom (2016)

PHI-base: the pathogen–host interactions database

di Urban, Martin, Cuzick, Alayne, Seager, James, Wood, Valerie, Rutherford, Kim, Venkatesh, Shilpa Yagwakote, De Silva, Nishadi, Martinez, Manuel Carbajo, Pedro, Helder, Yates, Andy D, Hassani-Pak, Keywan, Hammond-Kosack, Kim E
Pubblicato in Nucleic Acids Res (2020)

A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni

di Protasio, Anna V., Tsai, Isheng J., Babbage, Anne, Nichol, Sarah, Hunt, Martin, Aslett, Martin A., De Silva, Nishadi, Velarde, Giles S., Anderson, Tim J. C., Clark, Richard C., Davidson, Claire, Dillon, Gary P., Holroyd, Nancy E., LoVerde, Philip T., Lloyd, Christine, McQuillan, Jacquelline, Oliveira, Guilherme, Otto, Thomas D., Parker-Manuel, Sophia J., Quail, Michael A., Wilson, R. Alan, Zerlotini, Adhemar, Dunne, David W., Berriman, Matthew
Pubblicazione 2012

GeneDB—an annotation database for pathogens

di Logan-Klumpler, Flora J., De Silva, Nishadi, Boehme, Ulrike, Rogers, Matthew B., Velarde, Giles, McQuillan, Jacqueline A., Carver, Tim, Aslett, Martin, Olsen, Christian, Subramanian, Sandhya, Phan, Isabelle, Farris, Carol, Mitra, Siddhartha, Ramasamy, Gowthaman, Wang, Haiming, Tivey, Adrian, Jackson, Andrew, Houston, Robin, Parkhill, Julian, Holden, Matthew, Harb, Omar S., Brunk, Brian P., Myler, Peter J., Roos, David, Carrington, Mark, Smith, Deborah F., Hertz-Fowler, Christiane, Berriman, Matthew
Pubblicazione 2012

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

di Kersey, Paul Julian, Allen, James E, Allot, Alexis, Barba, Matthieu, Boddu, Sanjay, Bolt, Bruce J, Carvalho-Silva, Denise, Christensen, Mikkel, Davis, Paul, Grabmueller, Christoph, Kumar, Navin, Liu, Zicheng, Maurel, Thomas, Moore, Ben, McDowall, Mark D, Maheswari, Uma, Naamati, Guy, Newman, Victoria, Ong, Chuang Kee, Paulini, Michael, Pedro, Helder, Perry, Emily, Russell, Matthew, Sparrow, Helen, Tapanari, Electra, Taylor, Kieron, Vullo, Alessandro, Williams, Gareth, Zadissia, Amonida, Olson, Andrew, Stein, Joshua, Wei, Sharon, Tello-Ruiz, Marcela, Ware, Doreen, Luciani, Aurelien, Potter, Simon, Finn, Robert D, Urban, Martin, Hammond-Kosack, Kim E, Bolser, Dan M, De Silva, Nishadi, Howe, Kevin L, Langridge, Nicholas, Maslen, Gareth, Staines, Daniel Michael, Yates, Andrew
Pubblicato in Nucleic Acids Res (2018)

The genomes of four tapeworm species reveal adaptations to parasitism

di Tsai, Isheng J., Zarowiecki, Magdalena, Holroyd, Nancy, Garciarrubio, Alejandro, Sánchez-Flores, Alejandro, Brooks, Karen L., Tracey, Alan, Bobes, Raúl J., Fragoso, Gladis, Sciutto, Edda, Aslett, Martin, Beasley, Helen, Bennett, Hayley M., Cai, Xuepeng, Camicia, Federico, Clark, Richard, Cucher, Marcela, De Silva, Nishadi, Day, Tim A, Deplazes, Peter, Estrada, Karel, Fernández, Cecilia, Holland, Peter W. H., Hou, Junling, Hu, Songnian, Huckvale, Thomas, Hung, Stacy S., Kamenetzky, Laura, Keane, Jacqueline A., Kiss, Ferenc, Koziol, Uriel, Lambert, Olivia, Liu, Kan, Luo, Xuenong, Luo, Yingfeng, Macchiaroli, Natalia, Nichol, Sarah, Paps, Jordi, Parkinson, John, Pouchkina-Stantcheva, Natasha, Riddiford, Nick, Rosenzvit, Mara, Salinas, Gustavo, Wasmuth, James D., Zamanian, Mostafa, Zheng, Yadong, Cai, Jianping, Soberón, Xavier, Olson, Peter D., Laclette, Juan P., Brehm, Klaus, Berriman, Matthew
Pubblicazione 2013

Ensembl Genomes 2020—enabling non-vertebrate genomic research

di Howe, Kevin L, Contreras-Moreira, Bruno, De Silva, Nishadi, Maslen, Gareth, Akanni, Wasiu, Allen, James, Alvarez-Jarreta, Jorge, Barba, Matthieu, Bolser, Dan M, Cambell, Lahcen, Carbajo, Manuel, Chakiachvili, Marc, Christensen, Mikkel, Cummins, Carla, Cuzick, Alayne, Davis, Paul, Fexova, Silvie, Gall, Astrid, George, Nancy, Gil, Laurent, Gupta, Parul, Hammond-Kosack, Kim E, Haskell, Erin, Hunt, Sarah E, Jaiswal, Pankaj, Janacek, Sophie H, Kersey, Paul J, Langridge, Nick, Maheswari, Uma, Maurel, Thomas, McDowall, Mark D, Moore, Ben, Muffato, Matthieu, Naamati, Guy, Naithani, Sushma, Olson, Andrew, Papatheodorou, Irene, Patricio, Mateus, Paulini, Michael, Pedro, Helder, Perry, Emily, Preece, Justin, Rosello, Marc, Russell, Matthew, Sitnik, Vasily, Staines, Daniel M, Stein, Joshua, Tello-Ruiz, Marcela K, Trevanion, Stephen J, Urban, Martin, Wei, Sharon, Ware, Doreen, Williams, Gary, Yates, Andrew D, Flicek, Paul
Pubblicato in Nucleic Acids Res (2020)

Ensembl 2021

di Howe, Kevin L, Achuthan, Premanand, Allen, James, Allen, Jamie, Alvarez-Jarreta, Jorge, Amode, M Ridwan, Armean, Irina M, Azov, Andrey G, Bennett, Ruth, Bhai, Jyothish, Billis, Konstantinos, Boddu, Sanjay, Charkhchi, Mehrnaz, Cummins, Carla, Da Rin Fioretto, Luca, Davidson, Claire, Dodiya, Kamalkumar, El Houdaigui, Bilal, Fatima, Reham, Gall, Astrid, Garcia Giron, Carlos, Grego, Tiago, Guijarro-Clarke, Cristina, Haggerty, Leanne, Hemrom, Anmol, Hourlier, Thibaut, Izuogu, Osagie G, Juettemann, Thomas, Kaikala, Vinay, Kay, Mike, Lavidas, Ilias, Le, Tuan, Lemos, Diana, Gonzalez Martinez, Jose, Marugán, José Carlos, Maurel, Thomas, McMahon, Aoife C, Mohanan, Shamika, Moore, Benjamin, Muffato, Matthieu, Oheh, Denye N, Paraschas, Dimitrios, Parker, Anne, Parton, Andrew, Prosovetskaia, Irina, Sakthivel, Manoj P, Salam, Ahamed I Abdul, Schmitt, Bianca M, Schuilenburg, Helen, Sheppard, Dan, Steed, Emily, Szpak, Michal, Szuba, Marek, Taylor, Kieron, Thormann, Anja, Threadgold, Glen, Walts, Brandon, Winterbottom, Andrea, Chakiachvili, Marc, Chaubal, Ameya, De Silva, Nishadi, Flint, Bethany, Frankish, Adam, Hunt, Sarah E, IIsley, Garth R, Langridge, Nick, Loveland, Jane E, Martin, Fergal J, Mudge, Jonathan M, Morales, Joanella, Perry, Emily, Ruffier, Magali, Tate, John, Thybert, David, Trevanion, Stephen J, Cunningham, Fiona, Yates, Andrew D, Zerbino, Daniel R, Flicek, Paul
Pubblicato in Nucleic Acids Res (2020)