Studying bacterial transcriptomes using RNA-seq

Por Croucher, Nicholas J, Thomson, Nicholas R
Publicado em 2010

The Emergence of Bacterial “Hopeful Monsters”

Por Croucher, Nicholas J., Klugman, Keith P.
Publicado em 2014

Identification, variation and transcription of pneumococcal repeat sequences

Por Croucher, Nicholas J, Vernikos, Georgios S, Parkhill, Julian, Bentley, Stephen D
Publicado em 2011

Bacterial genomes in epidemiology—present and future

Por Croucher, Nicholas J., Harris, Simon R., Grad, Yonatan H., Hanage, William P.
Publicado em 2013

A High-Resolution View of Genome-Wide Pneumococcal Transformation

Por Croucher, Nicholas J., Harris, Simon R., Barquist, Lars, Parkhill, Julian, Bentley, Stephen D.
Publicado em 2012

Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage

Por Lehtinen, Sonja, Blanquart, François, Croucher, Nicholas J., Turner, Paul, Lipsitch, Marc, Fraser, Christophe
Publicado no Proc Natl Acad Sci U S A (2017)

Recombination produces coherent bacterial species clusters in both core and accessory genomes

Por Marttinen, Pekka, Croucher, Nicholas J., Gutmann, Michael U., Corander, Jukka, Hanage, William P.
Publicado no Microb Genom (2015)

Horizontal DNA Transfer Mechanisms of Bacteria as Weapons of Intragenomic Conflict

Por Croucher, Nicholas J., Mostowy, Rafal, Wymant, Christopher, Turner, Paul, Bentley, Stephen D., Fraser, Christophe
Publicado no PLoS Biol (2016)

Heterogeneity in the Frequency and Characteristics of Homologous Recombination in Pneumococcal Evolution

Por Mostowy, Rafal, Croucher, Nicholas J., Hanage, William P., Harris, Simon R., Bentley, Stephen, Fraser, Christophe
Publicado em 2014

Identification of pneumococcal colonization determinants in the stringent response pathway facilitated by genomic diversity

Por Li, Yuan, Croucher, Nicholas J, Thompson, Claudette M, Trzciński, Krzysztof, Hanage, William P, Lipsitch, Marc
Publicado no BMC Genomics (2015)

Diversification of bacterial genome content through distinct mechanisms over different timescales

Por Croucher, Nicholas J., Coupland, Paul G., Stevenson, Abbie E., Callendrello, Alanna, Bentley, Stephen D., Hanage, William P.
Publicado no Nat Commun (2014)

Detection of recombination events in bacterial genomes from large population samples

Por Marttinen, Pekka, Hanage, William P., Croucher, Nicholas J., Connor, Thomas R., Harris, Simon R., Bentley, Stephen D., Corander, Jukka
Publicado em 2012

Population genomic datasets describing the post-vaccine evolutionary epidemiology of Streptococcus pneumoniae

Por Croucher, Nicholas J., Finkelstein, Jonathan A., Pelton, Stephen I., Parkhill, Julian, Bentley, Stephen D., Lipsitch, Marc, Hanage, William P.
Publicado no Sci Data (2015)

Diverse evolutionary patterns of pneumococcal antigens identified by pangenome-wide immunological screening

Por Croucher, Nicholas J., Campo, Joseph J., Le, Timothy Q., Liang, Xiaowu, Bentley, Stephen D., Hanage, William P., Lipsitch, Marc
Publicado no Proc Natl Acad Sci U S A (2017)

Selective and Genetic Constraints on Pneumococcal Serotype Switching

Por Croucher, Nicholas J., Kagedan, Lisa, Thompson, Claudette M., Parkhill, Julian, Bentley, Stephen D., Finkelstein, Jonathan A., Lipsitch, Marc, Hanage, William P.
Publicado no PLoS Genet (2015)

Comparative Genomic Analysis of Ten Streptococcus pneumoniae Temperate Bacteriophages

Por Romero, Patricia, Croucher, Nicholas J., Hiller, N. Luisa, Hu, Fen Z., Ehrlich, Garth D., Bentley, Stephen D., García, Ernesto, Mitchell, Tim J.
Publicado em 2009

Stability of the pneumococcal population structure in Massachusetts as PCV13 was introduced

Por Chang, Qiuzhi, Stevenson, Abbie E, Croucher, Nicholas J, Lee, Grace M, Pelton, Stephen I, Lipsitch, Marc, Finkelstein, Jonathan A, Hanage, William P
Publicado no BMC Infect Dis (2015)

Proteomic and Genomic Characterization of Highly Infectious Clostridium difficile 630 Spores

Por Lawley, Trevor D., Croucher, Nicholas J., Yu, Lu, Clare, Simon, Sebaihia, Mohammed, Goulding, David, Pickard, Derek J., Parkhill, Julian, Choudhary, Jyoti, Dougan, Gordon
Publicado em 2009

Distinct Effects on Diversifying Selection by Two Mechanisms of Immunity against Streptococcus pneumoniae

Por Li, Yuan, Gierahn, Todd, Thompson, Claudette M., Trzciński, Krzysztof, Ford, Christopher B., Croucher, Nicholas, Gouveia, Paulo, Flechtner, Jessica B., Malley, Richard, Lipsitch, Marc
Publicado em 2012

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Por Croucher, Nicholas J., Page, Andrew J., Connor, Thomas R., Delaney, Aidan J., Keane, Jacqueline A., Bentley, Stephen D., Parkhill, Julian, Harris, Simon R.
Publicado no Nucleic Acids Res (2015)