Interconversion of Anthozoa GFP-like fluorescent and non-fluorescent proteins by mutagenesis

Autor Bulina, Maria E, Chudakov, Dmitry M, Mudrik, Nikolay N, Lukyanov, Konstantin A
Vydáno 2002

Hetero-oligomeric tagging diminishes non-specific aggregation of target proteins fused with Anthozoa fluorescent proteins.

Autor Bulina, Maria E, Verkhusha, Vladislav V, Staroverov, Dmitry B, Chudakov, Dmitry M, Lukyanov, Konstantin A
Vydáno 2003

A Crystallographic Study of Bright Far-Red Fluorescent Protein mKate Reveals pH-induced cis-trans Isomerization of the Chromophore

Autor Pletnev, Sergei, Shcherbo, Dmitry, Chudakov, Dmitry M., Pletneva, Nadezhda, Merzlyak, Ekaterina M., Wlodawer, Alexander, Dauter, Zbigniew, Pletnev, Vladimir
Vydáno 2008

Targeting cancer cells by using an antireceptor antibody-photosensitizer fusion protein

Autor Serebrovskaya, Ekaterina O., Edelweiss, Eveline F., Stremovskiy, Oleg A., Lukyanov, Konstantin A., Chudakov, Dmitry M., Deyev, Sergey M.
Vydáno 2009

Structural basis for bathochromic shift of fluorescence in far-red fluorescent proteins eqFP650 and eqFP670

Autor Pletnev, Sergei, Pletneva, Nadya V., Souslova, Ekaterina A., Chudakov, Dmitry M., Lukyanov, Sergey, Wlodawer, Alexander, Dauter, Zbigniew, Pletnev, Vladimir
Vydáno 2012

Optogenetic in vivo cell manipulation in KillerRed-expressing zebrafish transgenics

Autor Teh, Cathleen, Chudakov, Dmitry M, Poon, Kar-Lai, Mamedov, Ilgar Z, Sek, Jun-Yan, Shidlovsky, Konstantin, Lukyanov, Sergey, Korzh, Vladimir
Vydáno 2010

Circular Permutation of Red Fluorescent Proteins

Autor Shui, Bo, Wang, Qi, Lee, Frank, Byrnes, Laura J., Chudakov, Dmitry M., Lukyanov, Sergey A., Sondermann, Holger, Kotlikoff, Michael I.
Vydáno 2011

Insertion of the voltage-sensitive domain into circularly permuted red fluorescent protein as a design for genetically encoded voltage sensor

Autor Kost, Liubov A., Nikitin, Evgeny S., Ivanova, Violetta O., Sung, Uhna, Putintseva, Ekaterina V., Chudakov, Dmitry M., Balaban, Pavel M., Lukyanov, Konstantin A., Bogdanov, Alexey M.
Vydáno v PLoS One (2017)

Yellow fluorescent protein phiYFPv (Phialidium): structure and structure-based mutagenesis

Autor Pletneva, Nadya V., Pletnev, Vladimir Z., Souslova, Ekaterina, Chudakov, Dmitry M., Lukyanov, Sergey, Martynov, Vladimir I., Arhipova, Svetlena, Artemyev, Igor, Wlodawer, Alexander, Dauter, Zbigniew, Pletnev, Sergei
Vydáno 2013

tcR: an R package for T cell receptor repertoire advanced data analysis

Autor Nazarov, Vadim I., Pogorelyy, Mikhail V., Komech, Ekaterina A., Zvyagin, Ivan V., Bolotin, Dmitry A., Shugay, Mikhail, Chudakov, Dmitry M., Lebedev, Yury B., Mamedov, Ilgar Z.
Vydáno v BMC Bioinformatics (2015)

Substrate Recognition of Anthrax Lethal Factor Examined by Combinatorial and Pre-steady-state Kinetic Approaches

Autor Zakharova, Maria Yu., Kuznetsov, Nikita A., Dubiley, Svetlana A., Kozyr, Arina V., Fedorova, Olga S., Chudakov, Dmitry M., Knorre, Dmitry G., Shemyakin, Igor G., Gabibov, Alexander G., Kolesnikov, Alexander V.
Vydáno 2009

Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine

Autor Pletnev, Vladimir Z., Pletneva, Nadya V., Lukyanov, Konstantin A., Souslova, Ekaterina A., Fradkov, Arkady F., Chudakov, Dmitry M., Chepurnykh, Tatyana, Yampolsky, Ilia V., Wlodawer, Alexander, Dauter, Zbigniew, Pletnev, Sergei
Vydáno 2013

HLA binding of self-peptides is biased towards proteins with specific molecular functions

Autor Karnaukhov, Vadim, Paes, Wayne, Woodhouse, Isaac B., Partridge, Thomas, Nicastri, Annalisa, Brackenridge, Simon, Scherbinin, Dmitrii, Chudakov, Dmitry M., Zvyagin, Ivan V., Ternette, Nicola, Koohy, Hashem, Borrow, Persephone, Shugay, Mikhail
Vydáno v bioRxiv (2021)

Exploring the pre-immune landscape of antigen-specific T cells

Autor Pogorelyy, Mikhail V., Fedorova, Alla D., McLaren, James E., Ladell, Kristin, Bagaev, Dmitri V., Eliseev, Alexey V., Mikelov, Artem I., Koneva, Anna E., Zvyagin, Ivan V., Price, David A., Chudakov, Dmitry M., Shugay, Mikhail
Vydáno v Genome Med (2018)

Local fitness landscape of the green fluorescent protein

Autor Sarkisyan, Karen S., Bolotin, Dmitry A., Meer, Margarita V., Usmanova, Dinara R., Mishin, Alexander S., Sharonov, George V., Ivankov, Dmitry N., Bozhanova, Nina G., Baranov, Mikhail S., Soylemez, Onuralp, Bogatyreva, Natalya S., Vlasov, Peter K., Egorov, Evgeny S., Logacheva, Maria D., Kondrashov, Alexey S., Chudakov, Dmitry M., Putintseva, Ekaterina V., Mamedov, Ilgar Z., Tawfik, Dan S., Lukyanov, Konstantin A., Kondrashov, Fyodor A.
Vydáno v Nature (2016)