STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data

por Andreatta, Massimo, Carmona, Santiago J
Publicado no Bioinformatics (2020)

UCell: Robust and scalable single-cell gene signature scoring

por Andreatta, Massimo, Carmona, Santiago J.
Publicado no Comput Struct Biotechnol J (2021)

TcSNP: a database of genetic variation in Trypanosoma cruzi

por Ackermann, Alejandro A., Carmona, Santiago J., Agüero, Fernán
Publicado em 2009

Characterization of Toxoplasma gondii subtelomeric-like regions: identification of a long-range compositional bias that is also associated with gene-poor regions

por Dalmasso, María C, Carmona, Santiago J, Angel, Sergio O, Agüero, Fernán
Publicado em 2014

Deciphering the transcriptomic landscape of tumor-infiltrating CD8 lymphocytes in B16 melanoma tumors with single-cell RNA-Seq

por Carmona, Santiago J., Siddiqui, Imran, Bilous, Mariia, Held, Werner, Gfeller, David
Publicado no Oncoimmunology (2020)

Genome-wide analysis of 3′-untranslated regions supports the existence of post-transcriptional regulons controlling gene expression in trypanosomes

por De Gaudenzi, Javier G., Carmona, Santiago J., Agüero, Fernán, Frasch, Alberto C.
Publicado em 2013

Diagnostic Peptide Discovery: Prioritization of Pathogen Diagnostic Markers Using Multiple Features

por Carmona, Santiago J., Sartor, Paula A., Leguizamón, María S., Campetella, Oscar E., Agüero, Fernán
Publicado em 2012

Interpretation of T cell states from single-cell transcriptomics data using reference atlases

por Andreatta, Massimo, Corria-Osorio, Jesus, Müller, Sören, Cubas, Rafael, Coukos, George, Carmona, Santiago J.
Publicado no Nat Commun (2021)

APRANK: Computational Prioritization of Antigenic Proteins and Peptides From Complete Pathogen Proteomes

por Ricci, Alejandro D., Brunner, Mauricio, Ramoa, Diego, Carmona, Santiago J., Nielsen, Morten, Agüero, Fernán
Publicado no Front Immunol (2021)

High-resolution profiling of linear B-cell epitopes from mucin-associated surface proteins (MASPs) of Trypanosoma cruzi during human infections

por Durante, Ignacio M., La Spina, Pablo E., Carmona, Santiago J., Agüero, Fernán, Buscaglia, Carlos A.
Publicado no PLoS Negl Trop Dis (2017)

Enhanced Phenotype Definition for Precision Isolation of Precursor Exhausted Tumor-Infiltrating CD8 T Cells

por Martinez-Usatorre, Amaia, Carmona, Santiago J., Godfroid, Céline, Yacoub Maroun, Céline, Labiano, Sara, Romero, Pedro
Publicado no Front Immunol (2020)

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types

por Carmona, Santiago J., Teichmann, Sarah A., Ferreira, Lauren, Macaulay, Iain C., Stubbington, Michael J.T., Cvejic, Ana, Gfeller, David
Publicado no Genome Res (2017)

Next-generation ELISA diagnostic assay for Chagas Disease based on the combination of short peptidic epitopes

por Mucci, Juan, Carmona, Santiago J., Volcovich, Romina, Altcheh, Jaime, Bracamonte, Estefanía, Marco, Jorge D., Nielsen, Morten, Buscaglia, Carlos A., Agüero, Fernán
Publicado no PLoS Negl Trop Dis (2017)

TDR Targets: a chemogenomics resource for neglected diseases

por Magariños, María P., Carmona, Santiago J., Crowther, Gregory J., Ralph, Stuart A., Roos, David S., Shanmugam, Dhanasekaran, Van Voorhis, Wesley C., Agüero, Fernán
Publicado em 2012

Mapping Antigenic Motifs in the Trypomastigote Small Surface Antigen from Trypanosoma cruzi

por Balouz, Virginia, Cámara, María de los Milagros, Cánepa, Gaspar E., Carmona, Santiago J., Volcovich, Romina, Gonzalez, Nicolás, Altcheh, Jaime, Agüero, Fernán, Buscaglia, Carlos A.
Publicado no Clin Vaccine Immunol (2015)

Towards High-throughput Immunomics for Infectious Diseases: Use of Next-generation Peptide Microarrays for Rapid Discovery and Mapping of Antigenic Determinants

por Carmona, Santiago J., Nielsen, Morten, Schafer-Nielsen, Claus, Mucci, Juan, Altcheh, Jaime, Balouz, Virginia, Tekiel, Valeria, Frasch, Alberto C., Campetella, Oscar, Buscaglia, Carlos A., Agüero, Fernán
Publicado no Mol Cell Proteomics (2015)

Identification of Attractive Drug Targets in Neglected-Disease Pathogens Using an In Silico Approach

por Crowther, Gregory J., Shanmugam, Dhanasekaran, Carmona, Santiago J., Doyle, Maria A., Hertz-Fowler, Christiane, Berriman, Matthew, Nwaka, Solomon, Ralph, Stuart A., Roos, David S., Van Voorhis, Wesley C., Agüero, Fernán
Publicado em 2010

Molecular and antigenic characterization of Trypanosoma cruzi TolT proteins

por Lobo, Maite, Balouz, Virginia, Melli, Luciano, Carlevaro, Giannina, Cortina, María E., Cámara, María de los Milagros, Cánepa, Gaspar E., Carmona, Santiago J., Altcheh, Jaime, Campetella, Oscar, Ciocchini, Andrés E., Agüero, Fernán, Mucci, Juan, Buscaglia, Carlos A.
Publicado no PLoS Negl Trop Dis (2019)

Prediction of neo-epitope immunogenicity reveals TCR recognition determinants and provides insight into immunoediting

por Schmidt, Julien, Smith, Angela R., Magnin, Morgane, Racle, Julien, Devlin, Jason R., Bobisse, Sara, Cesbron, Julien, Bonnet, Victor, Carmona, Santiago J., Huber, Florian, Ciriello, Giovanni, Speiser, Daniel E., Bassani-Sternberg, Michal, Coukos, George, Baker, Brian M., Harari, Alexandre, Gfeller, David
Publicado no Cell Rep Med (2021)