The pan-cancer pathological regulatory landscape

ανά Falco, Matias M., Bleda, Marta, Carbonell-Caballero, José, Dopazo, Joaquín
Τόπος έκδοσης Sci Rep (2016)

Models of cell signaling uncover molecular mechanisms of high-risk neuroblastoma and predict disease outcome

ανά Hidalgo, Marta R., Amadoz, Alicia, Çubuk, Cankut, Carbonell-Caballero, José, Dopazo, Joaquín
Τόπος έκδοσης Biol Direct (2018)

A comparison of mechanistic signaling pathway activity analysis methods

ανά Amadoz, Alicia, Hidalgo, Marta R, Çubuk, Cankut, Carbonell-Caballero, José, Dopazo, Joaquín
Τόπος έκδοσης Brief Bioinform (2018)

A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrus

ανά Carbonell-Caballero, Jose, Alonso, Roberto, Ibañez, Victoria, Terol, Javier, Talon, Manuel, Dopazo, Joaquin
Τόπος έκδοσης Mol Biol Evol (2015)

High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes

ανά Hidalgo, Marta R., Cubuk, Cankut, Amadoz, Alicia, Salavert, Francisco, Carbonell-Caballero, José, Dopazo, Joaquin
Τόπος έκδοσης Oncotarget (2016)

Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models

ανά Salavert, Francisco, Hidago, Marta R., Amadoz, Alicia, Çubuk, Cankut, Medina, Ignacio, Crespo, Daniel, Carbonell-Caballero, Jose, Dopazo, Joaquín
Τόπος έκδοσης Nucleic Acids Res (2016)

The role of the interactome in the maintenance of deleterious variability in human populations

ανά Garcia-Alonso, Luz, Jiménez-Almazán, Jorge, Carbonell-Caballero, Jose, Vela-Boza, Alicia, Santoyo-López, Javier, Antiñolo, Guillermo, Dopazo, Joaquin
Τόπος έκδοσης Mol Syst Biol (2014)

Reference genome assessment from a population scale perspective: an accurate profile of variability and noise

ανά Carbonell-Caballero, José, Amadoz, Alicia, Alonso, Roberto, Hidalgo, Marta R, Çubuk, Cankut, Conesa, David, López-Quílez, Antonio, Dopazo, Joaquín
Τόπος έκδοσης Bioinformatics (2017)

Expression of Oncogenic Drivers in 3D Cell Culture Depends on Nuclear ATP Synthesis by NUDT5

ανά Pickup, Katherine E., Pardow, Felicitas, Carbonell-Caballero, José, Lioutas, Antonios, Villanueva-Cañas, José Luis, Wright, Roni H. G., Beato, Miguel
Τόπος έκδοσης Cancers (Basel) (2019)

Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models

ανά Çubuk, Cankut, Hidalgo, Marta R., Amadoz, Alicia, Rian, Kinza, Salavert, Francisco, Pujana, Miguel A., Mateo, Francesca, Herranz, Carmen, Carbonell-Caballero, Jose, Dopazo, Joaquín
Τόπος έκδοσης NPJ Syst Biol Appl (2019)

C/EBPα mediates the growth inhibitory effect of progestins on breast cancer cells

ανά Nacht, A Silvina, Ferrari, Roberto, Zaurin, Roser, Scabia, Valentina, Carbonell‐Caballero, José, Le Dily, Francois, Quilez, Javier, Leopoldi, Alexandra, Brisken, Cathrin, Beato, Miguel, Vicent, Guillermo P
Τόπος έκδοσης EMBO J (2019)

Plastome genomics in South American maize landraces: chloroplast lineages parallel the geographical structuring of nuclear gene pools

ανά López, Mariana Gabriela, Fass, Mónica, Rivas, Juan Gabriel, Carbonell-Caballero, José, Vera, Pablo, Puebla, Andrea, Defacio, Raquel, Dopazo, Joaquín, Paniego, Norma, Hopp, Horacio Esteban, Lia, Verónica Viviana
Τόπος έκδοσης Ann Bot (2021)

The Mutational Landscape of Acute Promyelocytic Leukemia Reveals an Interacting Network of Co-Occurrences and Recurrent Mutations

ανά Ibáñez, Mariam, Carbonell-Caballero, José, García-Alonso, Luz, Such, Esperanza, Jiménez-Almazán, Jorge, Vidal, Enrique, Barragán, Eva, López-Pavía, María, LLop, Marta, Martín, Iván, Gómez-Seguí, Inés, Montesinos, Pau, Sanz, Miguel A., Dopazo, Joaquín, Cervera, José
Τόπος έκδοσης PLoS One (2016)

The modular network structure of the mutational landscape of Acute Myeloid Leukemia

ανά Ibáñez, Mariam, Carbonell-Caballero, José, Such, Esperanza, García-Alonso, Luz, Liquori, Alessandro, López-Pavía, María, Llop, Marta, Alonso, Carmen, Barragán, Eva, Gómez-Seguí, Inés, Neef, Alexander, Hervás, David, Montesinos, Pau, Sanz, Guillermo, Sanz, Miguel Angel, Dopazo, Joaquín, Cervera, José
Τόπος έκδοσης PLoS One (2018)

Hormone-control regions mediate steroid receptor–dependent genome organization

ανά Le Dily, François, Vidal, Enrique, Cuartero, Yasmina, Quilez, Javier, Nacht, A. Silvina, Vicent, Guillermo P., Carbonell-Caballero, José, Sharma, Priyanka, Villanueva-Cañas, José Luis, Ferrari, Roberto, De Llobet, Lara Isabel, Verde, Gaetano, Wright, Roni H.G., Beato, Miguel
Τόπος έκδοσης Genome Res (2019)

Babelomics 5.0: functional interpretation for new generations of genomic data

ανά Alonso, Roberto, Salavert, Francisco, Garcia-Garcia, Francisco, Carbonell-Caballero, Jose, Bleda, Marta, Garcia-Alonso, Luz, Sanchis-Juan, Alba, Perez-Gil, Daniel, Marin-Garcia, Pablo, Sanchez, Ruben, Cubuk, Cankut, Hidalgo, Marta R., Amadoz, Alicia, Hernansaiz-Ballesteros, Rosa D., Alemán, Alejandro, Tarraga, Joaquin, Montaner, David, Medina, Ignacio, Dopazo, Joaquin
Τόπος έκδοσης Nucleic Acids Res (2015)

The effects of death and post-mortem cold ischemia on human tissue transcriptomes

ανά Ferreira, Pedro G., Muñoz-Aguirre, Manuel, Reverter, Ferran, Sá Godinho, Caio P., Sousa, Abel, Amadoz, Alicia, Sodaei, Reza, Hidalgo, Marta R., Pervouchine, Dmitri, Carbonell-Caballero, Jose, Nurtdinov, Ramil, Breschi, Alessandra, Amador, Raziel, Oliveira, Patrícia, Çubuk, Cankut, Curado, João, Aguet, François, Oliveira, Carla, Dopazo, Joaquin, Sammeth, Michael, Ardlie, Kristin G., Guigó, Roderic
Τόπος έκδοσης Nat Commun (2018)