Emergent gene order in a model of modular polyketide synthases

由 Callahan, Benjamin, Thattai, Mukund, Shraiman, Boris I.
出版 2009

In Nature, There Is Only Diversity

由 McLaren, Michael R., Callahan, Benjamin J.
發表在 mBio (2018)

Pathogen resistance may be the principal evolutionary advantage provided by the microbiome

由 McLaren, Michael R., Callahan, Benjamin J.
發表在 Philos Trans R Soc Lond B Biol Sci (2020)

The role of the microbiome in host evolution

由 Kolodny, Oren, Callahan, Benjamin J., Douglas, Angela E.
發表在 Philos Trans R Soc Lond B Biol Sci (2020)

Evaluation of fecal Lactobacillus populations in dogs with idiopathic epilepsy: a pilot study

由 Muñana, Karen R., Jacob, Megan E., Callahan, Benjamin J.
發表在 Anim Microbiome (2020)

REPRODUCIBLE RESEARCH WORKFLOW IN R FOR THE ANALYSIS OF PERSONALIZED HUMAN MICROBIOME DATA

由 CALLAHAN, BENJAMIN, PROCTOR, DIANA, RELMAN, DAVID, FUKUYAMA, JULIA, HOLMES, SUSAN
發表在 Pac Symp Biocomput (2016)

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

由 Callahan, Benjamin J, McMurdie, Paul J, Holmes, Susan P
發表在 ISME J (2017)

Consistent and correctable bias in metagenomic sequencing experiments

由 McLaren, Michael R, Willis, Amy D, Callahan, Benjamin J
發表在 eLife (2019)

Heterozygote advantage as a natural consequence of adaptation in diploids

由 Sellis, Diamantis, Callahan, Benjamin J., Petrov, Dmitri A., Messer, Philipp W.
出版 2011

Denoising PCR-amplified metagenome data

由 Rosen, Michael J, Callahan, Benjamin J, Fisher, Daniel S, Holmes, Susan P
出版 2012

Correlated Evolution of Nearby Residues in Drosophilid Proteins

由 Callahan, Benjamin, Neher, Richard A., Bachtrog, Doris, Andolfatto, Peter, Shraiman, Boris I.
出版 2011

Ultra-accurate microbial amplicon sequencing with synthetic long reads

由 Callahan, Benjamin J., Grinevich, Dmitry, Thakur, Siddhartha, Balamotis, Michael A., Yehezkel, Tuval Ben
發表在 Microbiome (2021)

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

由 Davis, Nicole M., Proctor, Diana M., Holmes, Susan P., Relman, David A., Callahan, Benjamin J.
發表在 Microbiome (2018)

DADA2: High resolution sample inference from Illumina amplicon data

由 Callahan, Benjamin J, McMurdie, Paul J, Rosen, Michael J, Han, Andrew W, Johnson, Amy Jo A, Holmes, Susan P
發表在 Nat Methods (2016)

Dosing Regimen of Enrofloxacin Impacts Intestinal Pharmacokinetics and the Fecal Microbiota in Steers

由 Ferguson, Kaitlyn M., Jacob, Megan E., Theriot, Casey M., Callahan, Benjamin J., Prange, Timo, Papich, Mark G., Foster, Derek M.
發表在 Front Microbiol (2018)

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution

由 Callahan, Benjamin J, Wong, Joan, Heiner, Cheryl, Oh, Steve, Theriot, Casey M, Gulati, Ajay S, McGill, Sarah K, Dougherty, Michael K
發表在 Nucleic Acids Res (2019)

Ceftiofur formulation differentially affects the intestinal drug concentration, resistance of fecal Escherichia coli, and the microbiome of steers

由 Foster, Derek M., Jacob, Megan E., Farmer, Kyle A., Callahan, Benjamin J., Theriot, Casey M., Kathariou, Sophia, Cernicchiaro, Natalia, Prange, Timo, Papich, Mark G.
發表在 PLoS One (2019)

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea

由 Bik, Elisabeth M., Costello, Elizabeth K., Switzer, Alexandra D., Callahan, Benjamin J., Holmes, Susan P., Wells, Randall S., Carlin, Kevin P., Jensen, Eric D., Venn-Watson, Stephanie, Relman, David A.
發表在 Nat Commun (2016)

Temporal and spatial variation of the human microbiota during pregnancy

由 DiGiulio, Daniel B., Callahan, Benjamin J., McMurdie, Paul J., Costello, Elizabeth K., Lyell, Deirdre J., Robaczewska, Anna, Sun, Christine L., Goltsman, Daniela S. A., Wong, Ronald J., Shaw, Gary, Stevenson, David K., Holmes, Susan P., Relman, David A.
發表在 Proc Natl Acad Sci U S A (2015)

Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women

由 Callahan, Benjamin J., DiGiulio, Daniel B., Goltsman, Daniela S. Aliaga, Sun, Christine L., Costello, Elizabeth K., Jeganathan, Pratheepa, Biggio, Joseph R., Wong, Ronald J., Druzin, Maurice L., Shaw, Gary M., Stevenson, David K., Holmes, Susan P., Relman, David A.
發表在 Proc Natl Acad Sci U S A (2017)