Emergent gene order in a model of modular polyketide synthases

por Callahan, Benjamin, Thattai, Mukund, Shraiman, Boris I.
Publicado 2009

In Nature, There Is Only Diversity

por McLaren, Michael R., Callahan, Benjamin J.
Publicado en mBio (2018)

Pathogen resistance may be the principal evolutionary advantage provided by the microbiome

por McLaren, Michael R., Callahan, Benjamin J.
Publicado en Philos Trans R Soc Lond B Biol Sci (2020)

The role of the microbiome in host evolution

por Kolodny, Oren, Callahan, Benjamin J., Douglas, Angela E.
Publicado en Philos Trans R Soc Lond B Biol Sci (2020)

Evaluation of fecal Lactobacillus populations in dogs with idiopathic epilepsy: a pilot study

por Muñana, Karen R., Jacob, Megan E., Callahan, Benjamin J.
Publicado en Anim Microbiome (2020)

REPRODUCIBLE RESEARCH WORKFLOW IN R FOR THE ANALYSIS OF PERSONALIZED HUMAN MICROBIOME DATA

por CALLAHAN, BENJAMIN, PROCTOR, DIANA, RELMAN, DAVID, FUKUYAMA, JULIA, HOLMES, SUSAN
Publicado en Pac Symp Biocomput (2016)

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

por Callahan, Benjamin J, McMurdie, Paul J, Holmes, Susan P
Publicado en ISME J (2017)

Consistent and correctable bias in metagenomic sequencing experiments

por McLaren, Michael R, Willis, Amy D, Callahan, Benjamin J
Publicado en eLife (2019)

Heterozygote advantage as a natural consequence of adaptation in diploids

por Sellis, Diamantis, Callahan, Benjamin J., Petrov, Dmitri A., Messer, Philipp W.
Publicado 2011

Denoising PCR-amplified metagenome data

por Rosen, Michael J, Callahan, Benjamin J, Fisher, Daniel S, Holmes, Susan P
Publicado 2012

Correlated Evolution of Nearby Residues in Drosophilid Proteins

por Callahan, Benjamin, Neher, Richard A., Bachtrog, Doris, Andolfatto, Peter, Shraiman, Boris I.
Publicado 2011

Ultra-accurate microbial amplicon sequencing with synthetic long reads

por Callahan, Benjamin J., Grinevich, Dmitry, Thakur, Siddhartha, Balamotis, Michael A., Yehezkel, Tuval Ben
Publicado en Microbiome (2021)

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

por Davis, Nicole M., Proctor, Diana M., Holmes, Susan P., Relman, David A., Callahan, Benjamin J.
Publicado en Microbiome (2018)

DADA2: High resolution sample inference from Illumina amplicon data

por Callahan, Benjamin J, McMurdie, Paul J, Rosen, Michael J, Han, Andrew W, Johnson, Amy Jo A, Holmes, Susan P
Publicado en Nat Methods (2016)

Dosing Regimen of Enrofloxacin Impacts Intestinal Pharmacokinetics and the Fecal Microbiota in Steers

por Ferguson, Kaitlyn M., Jacob, Megan E., Theriot, Casey M., Callahan, Benjamin J., Prange, Timo, Papich, Mark G., Foster, Derek M.
Publicado en Front Microbiol (2018)

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution

por Callahan, Benjamin J, Wong, Joan, Heiner, Cheryl, Oh, Steve, Theriot, Casey M, Gulati, Ajay S, McGill, Sarah K, Dougherty, Michael K
Publicado en Nucleic Acids Res (2019)

Ceftiofur formulation differentially affects the intestinal drug concentration, resistance of fecal Escherichia coli, and the microbiome of steers

por Foster, Derek M., Jacob, Megan E., Farmer, Kyle A., Callahan, Benjamin J., Theriot, Casey M., Kathariou, Sophia, Cernicchiaro, Natalia, Prange, Timo, Papich, Mark G.
Publicado en PLoS One (2019)

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea

por Bik, Elisabeth M., Costello, Elizabeth K., Switzer, Alexandra D., Callahan, Benjamin J., Holmes, Susan P., Wells, Randall S., Carlin, Kevin P., Jensen, Eric D., Venn-Watson, Stephanie, Relman, David A.
Publicado en Nat Commun (2016)

Temporal and spatial variation of the human microbiota during pregnancy

por DiGiulio, Daniel B., Callahan, Benjamin J., McMurdie, Paul J., Costello, Elizabeth K., Lyell, Deirdre J., Robaczewska, Anna, Sun, Christine L., Goltsman, Daniela S. A., Wong, Ronald J., Shaw, Gary, Stevenson, David K., Holmes, Susan P., Relman, David A.
Publicado en Proc Natl Acad Sci U S A (2015)

Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women

por Callahan, Benjamin J., DiGiulio, Daniel B., Goltsman, Daniela S. Aliaga, Sun, Christine L., Costello, Elizabeth K., Jeganathan, Pratheepa, Biggio, Joseph R., Wong, Ronald J., Druzin, Maurice L., Shaw, Gary M., Stevenson, David K., Holmes, Susan P., Relman, David A.
Publicado en Proc Natl Acad Sci U S A (2017)