Emergent gene order in a model of modular polyketide synthases

Tekijä Callahan, Benjamin, Thattai, Mukund, Shraiman, Boris I.
Julkaistu 2009

In Nature, There Is Only Diversity

Tekijä McLaren, Michael R., Callahan, Benjamin J.
Julkaisussa mBio (2018)

Pathogen resistance may be the principal evolutionary advantage provided by the microbiome

Tekijä McLaren, Michael R., Callahan, Benjamin J.
Julkaisussa Philos Trans R Soc Lond B Biol Sci (2020)

The role of the microbiome in host evolution

Tekijä Kolodny, Oren, Callahan, Benjamin J., Douglas, Angela E.
Julkaisussa Philos Trans R Soc Lond B Biol Sci (2020)

Evaluation of fecal Lactobacillus populations in dogs with idiopathic epilepsy: a pilot study

Tekijä Muñana, Karen R., Jacob, Megan E., Callahan, Benjamin J.
Julkaisussa Anim Microbiome (2020)

REPRODUCIBLE RESEARCH WORKFLOW IN R FOR THE ANALYSIS OF PERSONALIZED HUMAN MICROBIOME DATA

Tekijä CALLAHAN, BENJAMIN, PROCTOR, DIANA, RELMAN, DAVID, FUKUYAMA, JULIA, HOLMES, SUSAN
Julkaisussa Pac Symp Biocomput (2016)

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

Tekijä Callahan, Benjamin J, McMurdie, Paul J, Holmes, Susan P
Julkaisussa ISME J (2017)

Consistent and correctable bias in metagenomic sequencing experiments

Tekijä McLaren, Michael R, Willis, Amy D, Callahan, Benjamin J
Julkaisussa eLife (2019)

Heterozygote advantage as a natural consequence of adaptation in diploids

Tekijä Sellis, Diamantis, Callahan, Benjamin J., Petrov, Dmitri A., Messer, Philipp W.
Julkaistu 2011

Denoising PCR-amplified metagenome data

Tekijä Rosen, Michael J, Callahan, Benjamin J, Fisher, Daniel S, Holmes, Susan P
Julkaistu 2012

Correlated Evolution of Nearby Residues in Drosophilid Proteins

Tekijä Callahan, Benjamin, Neher, Richard A., Bachtrog, Doris, Andolfatto, Peter, Shraiman, Boris I.
Julkaistu 2011

Ultra-accurate microbial amplicon sequencing with synthetic long reads

Tekijä Callahan, Benjamin J., Grinevich, Dmitry, Thakur, Siddhartha, Balamotis, Michael A., Yehezkel, Tuval Ben
Julkaisussa Microbiome (2021)

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Tekijä Davis, Nicole M., Proctor, Diana M., Holmes, Susan P., Relman, David A., Callahan, Benjamin J.
Julkaisussa Microbiome (2018)

DADA2: High resolution sample inference from Illumina amplicon data

Tekijä Callahan, Benjamin J, McMurdie, Paul J, Rosen, Michael J, Han, Andrew W, Johnson, Amy Jo A, Holmes, Susan P
Julkaisussa Nat Methods (2016)

Dosing Regimen of Enrofloxacin Impacts Intestinal Pharmacokinetics and the Fecal Microbiota in Steers

Tekijä Ferguson, Kaitlyn M., Jacob, Megan E., Theriot, Casey M., Callahan, Benjamin J., Prange, Timo, Papich, Mark G., Foster, Derek M.
Julkaisussa Front Microbiol (2018)

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution

Tekijä Callahan, Benjamin J, Wong, Joan, Heiner, Cheryl, Oh, Steve, Theriot, Casey M, Gulati, Ajay S, McGill, Sarah K, Dougherty, Michael K
Julkaisussa Nucleic Acids Res (2019)

Ceftiofur formulation differentially affects the intestinal drug concentration, resistance of fecal Escherichia coli, and the microbiome of steers

Tekijä Foster, Derek M., Jacob, Megan E., Farmer, Kyle A., Callahan, Benjamin J., Theriot, Casey M., Kathariou, Sophia, Cernicchiaro, Natalia, Prange, Timo, Papich, Mark G.
Julkaisussa PLoS One (2019)

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea

Tekijä Bik, Elisabeth M., Costello, Elizabeth K., Switzer, Alexandra D., Callahan, Benjamin J., Holmes, Susan P., Wells, Randall S., Carlin, Kevin P., Jensen, Eric D., Venn-Watson, Stephanie, Relman, David A.
Julkaisussa Nat Commun (2016)

Temporal and spatial variation of the human microbiota during pregnancy

Tekijä DiGiulio, Daniel B., Callahan, Benjamin J., McMurdie, Paul J., Costello, Elizabeth K., Lyell, Deirdre J., Robaczewska, Anna, Sun, Christine L., Goltsman, Daniela S. A., Wong, Ronald J., Shaw, Gary, Stevenson, David K., Holmes, Susan P., Relman, David A.
Julkaisussa Proc Natl Acad Sci U S A (2015)

Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women

Tekijä Callahan, Benjamin J., DiGiulio, Daniel B., Goltsman, Daniela S. Aliaga, Sun, Christine L., Costello, Elizabeth K., Jeganathan, Pratheepa, Biggio, Joseph R., Wong, Ronald J., Druzin, Maurice L., Shaw, Gary M., Stevenson, David K., Holmes, Susan P., Relman, David A.
Julkaisussa Proc Natl Acad Sci U S A (2017)