Emergent gene order in a model of modular polyketide synthases

gan Callahan, Benjamin, Thattai, Mukund, Shraiman, Boris I.
Cyhoeddwyd 2009

In Nature, There Is Only Diversity

gan McLaren, Michael R., Callahan, Benjamin J.
Cyhoeddwyd yn mBio (2018)

Pathogen resistance may be the principal evolutionary advantage provided by the microbiome

gan McLaren, Michael R., Callahan, Benjamin J.
Cyhoeddwyd yn Philos Trans R Soc Lond B Biol Sci (2020)

The role of the microbiome in host evolution

gan Kolodny, Oren, Callahan, Benjamin J., Douglas, Angela E.
Cyhoeddwyd yn Philos Trans R Soc Lond B Biol Sci (2020)

Evaluation of fecal Lactobacillus populations in dogs with idiopathic epilepsy: a pilot study

gan Muñana, Karen R., Jacob, Megan E., Callahan, Benjamin J.
Cyhoeddwyd yn Anim Microbiome (2020)

REPRODUCIBLE RESEARCH WORKFLOW IN R FOR THE ANALYSIS OF PERSONALIZED HUMAN MICROBIOME DATA

gan CALLAHAN, BENJAMIN, PROCTOR, DIANA, RELMAN, DAVID, FUKUYAMA, JULIA, HOLMES, SUSAN
Cyhoeddwyd yn Pac Symp Biocomput (2016)

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

gan Callahan, Benjamin J, McMurdie, Paul J, Holmes, Susan P
Cyhoeddwyd yn ISME J (2017)

Consistent and correctable bias in metagenomic sequencing experiments

gan McLaren, Michael R, Willis, Amy D, Callahan, Benjamin J
Cyhoeddwyd yn eLife (2019)

Heterozygote advantage as a natural consequence of adaptation in diploids

gan Sellis, Diamantis, Callahan, Benjamin J., Petrov, Dmitri A., Messer, Philipp W.
Cyhoeddwyd 2011

Denoising PCR-amplified metagenome data

gan Rosen, Michael J, Callahan, Benjamin J, Fisher, Daniel S, Holmes, Susan P
Cyhoeddwyd 2012

Correlated Evolution of Nearby Residues in Drosophilid Proteins

gan Callahan, Benjamin, Neher, Richard A., Bachtrog, Doris, Andolfatto, Peter, Shraiman, Boris I.
Cyhoeddwyd 2011

Ultra-accurate microbial amplicon sequencing with synthetic long reads

gan Callahan, Benjamin J., Grinevich, Dmitry, Thakur, Siddhartha, Balamotis, Michael A., Yehezkel, Tuval Ben
Cyhoeddwyd yn Microbiome (2021)

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

gan Davis, Nicole M., Proctor, Diana M., Holmes, Susan P., Relman, David A., Callahan, Benjamin J.
Cyhoeddwyd yn Microbiome (2018)

DADA2: High resolution sample inference from Illumina amplicon data

gan Callahan, Benjamin J, McMurdie, Paul J, Rosen, Michael J, Han, Andrew W, Johnson, Amy Jo A, Holmes, Susan P
Cyhoeddwyd yn Nat Methods (2016)

Dosing Regimen of Enrofloxacin Impacts Intestinal Pharmacokinetics and the Fecal Microbiota in Steers

gan Ferguson, Kaitlyn M., Jacob, Megan E., Theriot, Casey M., Callahan, Benjamin J., Prange, Timo, Papich, Mark G., Foster, Derek M.
Cyhoeddwyd yn Front Microbiol (2018)

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution

gan Callahan, Benjamin J, Wong, Joan, Heiner, Cheryl, Oh, Steve, Theriot, Casey M, Gulati, Ajay S, McGill, Sarah K, Dougherty, Michael K
Cyhoeddwyd yn Nucleic Acids Res (2019)

Ceftiofur formulation differentially affects the intestinal drug concentration, resistance of fecal Escherichia coli, and the microbiome of steers

gan Foster, Derek M., Jacob, Megan E., Farmer, Kyle A., Callahan, Benjamin J., Theriot, Casey M., Kathariou, Sophia, Cernicchiaro, Natalia, Prange, Timo, Papich, Mark G.
Cyhoeddwyd yn PLoS One (2019)

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea

gan Bik, Elisabeth M., Costello, Elizabeth K., Switzer, Alexandra D., Callahan, Benjamin J., Holmes, Susan P., Wells, Randall S., Carlin, Kevin P., Jensen, Eric D., Venn-Watson, Stephanie, Relman, David A.
Cyhoeddwyd yn Nat Commun (2016)

Temporal and spatial variation of the human microbiota during pregnancy

gan DiGiulio, Daniel B., Callahan, Benjamin J., McMurdie, Paul J., Costello, Elizabeth K., Lyell, Deirdre J., Robaczewska, Anna, Sun, Christine L., Goltsman, Daniela S. A., Wong, Ronald J., Shaw, Gary, Stevenson, David K., Holmes, Susan P., Relman, David A.
Cyhoeddwyd yn Proc Natl Acad Sci U S A (2015)

Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women

gan Callahan, Benjamin J., DiGiulio, Daniel B., Goltsman, Daniela S. Aliaga, Sun, Christine L., Costello, Elizabeth K., Jeganathan, Pratheepa, Biggio, Joseph R., Wong, Ronald J., Druzin, Maurice L., Shaw, Gary M., Stevenson, David K., Holmes, Susan P., Relman, David A.
Cyhoeddwyd yn Proc Natl Acad Sci U S A (2017)