D-peaks: A visual tool to display ChIP-seq peaks along the genome

Por Brohée, Sylvain, Bontempi, Gianluca
Publicado em 2012

Experimental assessment of static and dynamic algorithms for gene regulation inference from time series expression data

Por Lopes, Miguel, Bontempi, Gianluca
Publicado em 2013

minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information

Por Meyer, Patrick E, Lafitte, Frédéric, Bontempi, Gianluca
Publicado em 2008

On the Impact of Entropy Estimation on Transcriptional Regulatory Network Inference Based on Mutual Information

Por Olsen, Catharina, Meyer, Patrick E, Bontempi, Gianluca
Publicado em 2008

Distributed Principal Component Analysis for Wireless Sensor Networks

Por Le Borgne, Yann-Aël, Raybaud, Sylvain, Bontempi, Gianluca
Publicado em 2008

Information-Theoretic Inference of Large Transcriptional Regulatory Networks

Por Meyer, Patrick E, Kontos, Kevin, Lafitte, Frederic, Bontempi, Gianluca
Publicado em 2007

Integrative Analysis with Monte Carlo Cross-Validation Reveals miRNAs Regulating Pathways Cross-Talk in Aggressive Breast Cancer

Por Colaprico, Antonio, Cava, Claudia, Bertoli, Gloria, Bontempi, Gianluca, Castiglioni, Isabella
Publicado no Biomed Res Int (2015)

Machine learning techniques to identify putative genes involved in nitrogen catabolite repression in the yeast Saccharomyces cerevisiae

Por Kontos, Kevin, Godard, Patrice, André, Bruno, van Helden, Jacques, Bontempi, Gianluca
Publicado em 2008

Multiple-input multiple-output causal strategies for gene selection

Por Bontempi, Gianluca, Haibe-Kains, Benjamin, Desmedt, Christine, Sotiriou, Christos, Quackenbush, John
Publicado em 2011

Relevance of different prior knowledge sources for inferring gene interaction networks

Por Olsen, Catharina, Bontempi, Gianluca, Emmert-Streib, Frank, Quackenbush, John, Haibe-Kains, Benjamin
Publicado em 2014

A comprehensive overview of Infinium HumanMethylation450 data processing

Por Dedeurwaerder, Sarah, Defrance, Matthieu, Bizet, Martin, Calonne, Emilie, Bontempi, Gianluca, Fuks, François
Publicado no Brief Bioinform (2014)

How interacting pathways are regulated by miRNAs in breast cancer subtypes

Por Cava, Claudia, Colaprico, Antonio, Bertoli, Gloria, Bontempi, Gianluca, Mauri, Giancarlo, Castiglioni, Isabella
Publicado no BMC Bioinformatics (2016)

A fuzzy gene expression-based computational approach improves breast cancer prognostication

Por Haibe-Kains, Benjamin, Desmedt, Christine, Rothé, Françoise, Piccart, Martine, Sotiriou, Christos, Bontempi, Gianluca
Publicado em 2010

Effect of 21 Different Nitrogen Sources on Global Gene Expression in the Yeast Saccharomyces cerevisiae

Por Godard, Patrice, Urrestarazu, Antonio, Vissers, Stéphan, Kontos, Kevin, Bontempi, Gianluca, van Helden, Jacques, André, Bruno
Publicado em 2007

Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks

Por Haibe-Kains, Benjamin, Olsen, Catharina, Djebbari, Amira, Bontempi, Gianluca, Correll, Mick, Bouton, Christopher, Quackenbush, John
Publicado em 2012

A Three-Gene Model to Robustly Identify Breast Cancer Molecular Subtypes

Por Haibe-Kains, Benjamin, Desmedt, Christine, Loi, Sherene, Culhane, Aedin C., Bontempi, Gianluca, Quackenbush, John, Sotiriou, Christos
Publicado em 2012

TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages

Por Silva, Tiago C., Colaprico, Antonio, Olsen, Catharina, D'Angelo, Fulvio, Bontempi, Gianluca, Ceccarelli, Michele, Noushmehr, Houtan
Publicado no F1000Res (2016)

Inference and validation of predictive gene networks from biomedical literature and gene expression data

Por Olsen, Catharina, Fleming, Kathleen, Prendergast, Niall, Rubio, Renee, Emmert-Streib, Frank, Bontempi, Gianluca, Haibe-Kains, Benjamin, Quackenbush, John
Publicado em 2014

Using shRNA experiments to validate gene regulatory networks

Por Olsen, Catharina, Fleming, Kathleen, Prendergast, Niall, Rubio, Renee, Emmert-Streib, Frank, Bontempi, Gianluca, Quackenbush, John, Haibe-Kains, Benjamin
Publicado no Genom Data (2015)

Comparison of prognostic gene expression signatures for breast cancer

Por van't Veer Laura, Cardoso Fatima, Buyse Marc, Piette Fanny, Desmedt Christine, Haibe-Kains Benjamin, Piccart Martine, Bontempi Gianluca, Sotiriou Christos
Publicado em 2008-08-01