Sequence embedding for fast construction of guide trees for multiple sequence alignment

по Blackshields, Gordon, Sievers, Fabian, Shi, Weifeng, Wilm, Andreas, Higgins, Desmond G
Опубликовано 2010

Evaluating Established Methods for Rumen 16S rRNA Amplicon Sequencing With Mock Microbial Populations

по McGovern, Emily, Waters, Sinéad M., Blackshields, Gordon, McCabe, Matthew S.
Опубликовано в: Front Microbiol (2018)

Coevolution with Bacteriophages Drives Genome-Wide Host Evolution and Constrains the Acquisition of Abiotic-Beneficial Mutations

по Scanlan, Pauline D., Hall, Alex R., Blackshields, Gordon, Friman, Ville-P., Davis, Michael R., Goldberg, Joanna B., Buckling, Angus
Опубликовано в: Mol Biol Evol (2015)

An integrated analysis of the SOX2 microRNA response program in human pluripotent and nullipotent stem cell lines

по Vencken, Sebastian F, Sethupathy, Praveen, Blackshields, Gordon, Spillane, Cathy, Elbaruni, Salah, Sheils, Orla, Gallagher, Michael F, O’Leary, John J
Опубликовано 2014

Pluripotency markers are differentially induced by MEK inhibition in thyroid and melanoma BRAFV600E cell lines

по Dorris, Emma R., Blackshields, Gordon, Sommerville, Gary, Alhashemi, Mohsen, Dias, Andrew, McEneaney, Victoria, Smyth, Paul, O'Leary, John J., Sheils, Orla
Опубликовано в: Cancer Biol Ther (2016)

The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency

по Higgins, Marc G., Kenny, David A., Fitzsimons, Claire, Blackshields, Gordon, Coyle, Séan, McKenna, Clare, McGee, Mark, Morris, Derek W., Waters, Sinéad M.
Опубликовано в: BMC Genomics (2019)

Circular RNAs are differentially expressed in prostate cancer and are potentially associated with resistance to enzalutamide

по Greene, John, Baird, Anne-Marie, Casey, Orla, Brady, Lauren, Blackshields, Gordon, Lim, Marvin, O’Brien, Odharnaith, Gray, Steven G., McDermott, Raymond, Finn, Stephen P.
Опубликовано в: Sci Rep (2019)

Identifying novel hypoxia-associated markers of chemoresistance in ovarian cancer

по McEvoy, Lynda M., O’Toole, Sharon A., Spillane, Cathy D., Martin, Cara M., Gallagher, Michael F., Stordal, Britta, Blackshields, Gordon, Sheils, Orla, O’Leary, John J.
Опубликовано в: BMC Cancer (2015)

Experimental challenge with bovine respiratory syncytial virus in dairy calves: bronchial lymph node transcriptome response

по Johnston, Dayle, Earley, Bernadette, McCabe, Matthew S., Lemon, Ken, Duffy, Catherine, McMenamy, Michael, Cosby, S. Louise, Kim, JaeWoo, Blackshields, Gordon, Taylor, Jeremy F., Waters, Sinead M.
Опубликовано в: Sci Rep (2019)

The role of the MAD2-TLR4-MyD88 axis in paclitaxel resistance in ovarian cancer

по Bates, Mark, Spillane, Cathy D., Gallagher, Michael F., McCann, Amanda, Martin, Cara, Blackshields, Gordon, Keegan, Helen, Gubbins, Luke, Brooks, Robert, Brooks, Doug, Selemidis, Stavros, O’Toole, Sharon, O’Leary, John J.
Опубликовано в: PLoS One (2020)

Prostate cancer-derived holoclones: a novel and effective model for evaluating cancer stemness

по Flynn, Louise, Barr, Martin P., Baird, Anne-Marie, Smyth, Paul, Casey, Orla M., Blackshields, Gordon, Greene, John, Pennington, Stephen R., Hams, Emily, Fallon, Padraic G., O’Leary, John, Sheils, Orla, Finn, Stephen P.
Опубликовано в: Sci Rep (2020)

CD10(−)/ALDH(−) cells are the sole cisplatin-resistant component of a novel ovarian cancer stem cell hierarchy

по Ffrench, Brendan, Gasch, Claudia, Hokamp, Karsten, Spillane, Cathy, Blackshields, Gordon, Mahgoub, Thamir Mahmoud, Bates, Mark, Kehoe, Louise, Mooney, Aoibhinn, Doyle, Ronan, Doyle, Brendan, O'Donnell, Dearbhaile, Gleeson, Noreen, Hennessy, Bryan T, Stordal, Britta, O'Riain, Ciaran, Lambkin, Helen, O'Toole, Sharon, O'Leary, John J, Gallagher, Michael F
Опубликовано в: Cell Death Dis (2017)

MyD88 is an essential component of retinoic acid-induced differentiation in human pluripotent embryonal carcinoma cells

по Sulaiman, Gomaa, Cooke, Aoife, Ffrench, Brendan, Gasch, Claudia, Abdullai, Olayemi Azeez, O’Connor, Kevin, Elbaruni, Salah, Blackshields, Gordon, Spillane, Cathy, Keegan, Helen, McEneaney, Victoria, Knittel, Ronan, Rogers, Annamarie, Jeffery, Ian B, Doyle, Brendan, Bates, Mark, d’Adhemar, Charles, Lee, Mathia YC, Campbell, Eric L, Moynagh, Paul N, Higgins, Desmond G, O’Toole, Sharon, O’Neill, Luke, O’Leary, John J, Gallagher, Michael F
Опубликовано в: Cell Death Differ (2017)