A One-Dimensional Reaction Coordinate for Identification of Transition States from Explicit Solvent P(fold)-Like Calculations

ανά Beck, David A. C., Daggett, Valerie
Έκδοση 2007

Natural Selection in Synthetic Communities Highlights the Roles of Methylococcaceae and Methylophilaceae and Suggests Differential Roles for Alternative Methanol Dehydrogenases in...

ανά Yu, Zheng, Beck, David A. C., Chistoserdova, Ludmila
Τόπος έκδοσης Front Microbiol (2017)

Difference in C(3)–C(4) metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1

ανά Fu, Yanfen, Beck, David A. C., Lidstrom, Mary E.
Τόπος έκδοσης BMC Microbiol (2016)

MxaY regulates the lanthanide-mediated methanol dehydrogenase switch in Methylomicrobium buryatense

ανά Chu, Frances, Beck, David A.C., Lidstrom, Mary E.
Τόπος έκδοσης PeerJ (2016)

Exploring the Energy Landscape of Protein Folding using Replica-Exchange and Conventional Molecular Dynamics Simulations

ανά Beck, David A. C., White, George W. N., Daggett, Valerie
Έκδοση 2006

A consensus view of fold space: Combining SCOP, CATH, and the Dali Domain Dictionary

ανά Day, Ryan, Beck, David A.C., Armen, Roger S., Daggett, Valerie
Έκδοση 2003

Side-Chain Dynamics Are Critical for Water Permeation through Aquaporin-1

ανά Smolin, Nikolai, Li, Bin, Beck, David A. C., Daggett, Valerie
Έκδοση 2008

Microscopic reversibility of protein folding in molecular dynamics simulations of the engrailed homeodomain

ανά McCully, Michelle E., Beck, David A.C., Daggett, Valerie
Έκδοση 2008

Multimolecule test-tube simulations of protein unfolding and aggregation

ανά McCully, Michelle E., Beck, David A. C., Daggett, Valerie
Έκδοση 2012

Promiscuous contacts and heightened dynamics increase thermostability in an engineered variant of the engrailed homeodomain

ανά McCully, Michelle E., Beck, David A.C., Daggett, Valerie
Έκδοση 2013

Attention-based generative models for de novo molecular design

ανά Dollar, Orion, Joshi, Nisarg, Beck, David A. C., Pfaendtner, Jim
Τόπος έκδοσης Chem Sci (2021)

The intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins

ανά Beck, David A. C., Alonso, Darwin O. V., Inoyama, Daigo, Daggett, Valerie
Έκδοση 2008

Oxygen availability is a major factor in determining the composition of microbial communities involved in methane oxidation

ανά Hernandez, Maria E., Beck, David A.C., Lidstrom, Mary E., Chistoserdova, Ludmila
Τόπος έκδοσης PeerJ (2015)

A Synthetic Ecology Perspective: How Well Does Behavior of Model Organisms in the Laboratory Predict Microbial Activities in Natural Habitats?

ανά Yu, Zheng, Krause, Sascha M. B., Beck, David A. C., Chistoserdova, Ludmila
Τόπος έκδοσης Front Microbiol (2016)

Refolding the Engrailed Homeodomain: Structural Basis for the Accumulation of a Folding Intermediate

ανά McCully, Michelle E., Beck, David A.C., Fersht, Alan R., Daggett, Valerie
Έκδοση 2010

DNA-SIP based genome-centric metagenomics identifies key long-chain fatty acid-degrading populations in anaerobic digesters with different feeding frequencies

ανά Ziels, Ryan M, Sousa, Diana Z, Stensel, H David, Beck, David A C
Τόπος έκδοσης ISME J (2018)

Core Metabolism Shifts during Growth on Methanol versus Methane in the Methanotroph Methylomicrobium buryatense 5GB1

ανά Fu, Yanfen, He, Lian, Reeve, Jennifer, Beck, David A. C., Lidstrom, Mary E.
Τόπος έκδοσης mBio (2019)

Deep Sequencing of Porphyromonas gingivalis and Comparative Transcriptome Analysis of a LuxS Mutant

ανά Hirano, Takanori, Beck, David A. C., Demuth, Donald R., Hackett, Murray, Lamont, Richard J.
Έκδοση 2012

Comparative transcriptomics in three Methylophilaceae species uncover different strategies for environmental adaptation

ανά Vorobev, Alexey, Beck, David A.C., Kalyuzhnaya, Marina G., Lidstrom, Mary E., Chistoserdova, Ludmila
Έκδοση 2013

Ethylmalonyl Coenzyme A Mutase Operates as a Metabolic Control Point in Methylobacterium extorquens AM1

ανά Good, Nathan M., Martinez-Gomez, N. Cecilia, Beck, David A. C., Lidstrom, Mary E.
Τόπος έκδοσης J Bacteriol (2015)