Characteristics and Validation Techniques for PCA-Based Gene-Expression Signatures

Por Berglund, Anders E., Welsh, Eric A., Eschrich, Steven A.
Publicado no Int J Genomics (2017)

Iterative rank-order normalization of gene expression microarray data

Por Welsh, Eric A, Eschrich, Steven A, Berglund, Anders E, Fenstermacher, David A
Publicado em 2013

BIRC3 is a biomarker of mesenchymal habitat of glioblastoma, and a mediator of survival adaptation in hypoxia-driven glioblastoma habitats

Por Wang, Dapeng, Berglund, Anders E., Kenchappa, Rajappa S., MacAulay, Robert J., Mulé, James J., Etame, Arnold B.
Publicado no Sci Rep (2017)

Evaluating somatic tumor mutation detection without matched normal samples

Por Teer, Jamie K., Zhang, Yonghong, Chen, Lu, Welsh, Eric A., Cress, W. Douglas, Eschrich, Steven A., Berglund, Anders E.
Publicado no Hum Genomics (2017)

Induction of Tertiary Lymphoid Structures With Antitumor Function by a Lymph Node-Derived Stromal Cell Line

Por Zhu, Genyuan, Nemoto, Satoshi, Mailloux, Adam W., Perez-Villarroel, Patricio, Nakagawa, Ryosuke, Falahat, Rana, Berglund, Anders E., Mulé, James J.
Publicado no Front Immunol (2018)

Expanding epigenomics to archived FFPE tissues: An evaluation of DNA repair methodologies

Por Siegel, Erin M, Berglund, Anders E., Riggs, Bridget M, Eschrich, Steven A., Putney, Ryan M., Ajidahun, Abidemi O., Coppola, Domenico, Shibata, David
Publicado no Cancer Epidemiol Biomarkers Prev (2014)

Evaluation of invasive breast cancer samples using a 12-chemokine gene expression score: correlation with clinical outcomes

Por Prabhakaran, Sangeetha, Rizk, Victoria T., Ma, Zhenjun, Cheng, Chia-Ho, Berglund, Anders E., Coppola, Dominico, Khalil, Farah, Mulé, James J., Soliman, Hatem H.
Publicado no Breast Cancer Res (2017)

Tristetraprolin disables prostate cancer maintenance by impairing proliferation and metabolic function

Por Berglund, Anders E., Scott, Kristen E.N., Li, Weimin, Yang, Chunying, Fernandez, Mario R., Schaub, Franz X., Cleveland, John L., Rounbehler, Robert J.
Publicado no Oncotarget (2016)

Differences between colon cancer primaries and metastases utilizing a molecular assay for tumor radiosensitivity suggest implications for potential oligometastatic SBRT patient sel...

Por Ahmed, Kamran A., Fulp, William J., Berglund, Anders E., Hoffe, Sarah E., Dilling, Thomas J., Eschrich, Steven A., Shridhar, Ravi, Torres-Roca, Javier F.
Publicado no Int J Radiat Oncol Biol Phys (2015)

12-Chemokine Gene Signature Identifies Lymph Node-like Structures in Melanoma: Potential for Patient Selection for Immunotherapy?

Por Messina, Jane L., Fenstermacher, David A., Eschrich, Steven, Qu, Xiaotao, Berglund, Anders E., Lloyd, Mark C., Schell, Michael J., Sondak, Vernon K., Weber, Jeffrey S., Mulé, James J.
Publicado em 2012

The radiosensitivity of brain metastases based upon primary histology utilizing a multigene index of tumor radiosensitivity

Por Ahmed, Kamran A., Berglund, Anders E., Welsh, Eric A., Naghavi, Arash O., Kim, Youngchul, Yu, Michael, Robinson, Timothy J., Eschrich, Steven A., Johnstone, Peter A.S., Torres-Roca, Javier F.
Publicado no Neuro Oncol (2017)

Semiquantitative Computed Tomographic Characteristics for Lung Adenocarcinoma and Their Association with Lung Cancer Survival

Por Wang, Hua, Schabath, Matthew B., Liu, Ying, Berglund, Anders E., Bloom, Gregory C., Kim, Jongphil, Stringfield, Olya, Eikman, Edward A., Klippenstein, Donald L., Heine, John J., Eschrich, Steven A., Ye, Zhaoxiang, Gillies, Robert J.
Publicado no Clin Lung Cancer (2015)

Quantitative Computed Tomographic Descriptors Associate Tumor Shape Complexity and Intratumor Heterogeneity with Prognosis in Lung Adenocarcinoma

Por Grove, Olya, Berglund, Anders E., Schabath, Matthew B., Aerts, Hugo J. W. L., Dekker, Andre, Wang, Hua, Velazquez, Emmanuel Rios, Lambin, Philippe, Gu, Yuhua, Balagurunathan, Yoganand, Eikman, Edward, Gatenby, Robert A., Eschrich, Steven, Gillies, Robert J.
Publicado no PLoS One (2015)

Gene expression data reveal common pathways that characterize the unifocal nature of ovarian cancer

Por MARCHION, Douglas C., XIONG, Yin, CHON, Hye Sook, SAWAH, Entidhar AL, ZGHEIB, Nadim BOU, RAMIREZ, Ingrid J., ABBASI, Forough, STICKLES, Xiaomang B., JUDSON, Patricia L., HAKAM, Ardeshir, GONZALEZ-BOSQUET, Jesus, WENHAM, Robert M., APTE, Sachin M., BERGLUND, Anders E., LANCASTER, Johnathan M.
Publicado em 2013

BAD-mediated apoptotic pathway is associated with human cancer development

Por STICKLES, XIAOMANG B, MARCHION, DOUGLAS C, BICAKU, ELONA, SAWAH, ENTIDHAR AL, ABBASI, FOROUGH, XIONG, YIN, ZGHEIB, NADIM BOU, BOAC, BERNADETTE M, ORR, BRIAN C, JUDSON, PATRICIA L, BERRY, AMY, HAKAM, ARDESHIR, WENHAM, ROBERT M, APTE, SACHIN M, BERGLUND, ANDERS E, LANCASTER, JOHNATHAN M
Publicado no Int J Mol Med (2015)

Sensitivity of ovarian cancer cells to acetaminophen reveals biological pathways that affect patient survival

Por BUSH, STEPHEN H., TOLLIN, SHARON, MARCHION, DOUGLAS C., XIONG, YIN, ABBASI, FOROUGH, RAMIREZ, INGRID J., ZGHEIB, NADIM BOU, BOAC, BERNADETTE, JUDSON, PATRICIA L., CHON, HYE SOOK, WENHAM, ROBERT M., APTE, SACHIN M., CUBITT, CHRISTOPHER L., BERGLUND, ANDERS E., HAVRILESKY, LAURA J., LANCASTER, JOHNATHAN M.
Publicado no Mol Clin Oncol (2016)

Differential association of STK11 and TP53 with KRAS mutation-associated gene expression, proliferation and immune surveillance in lung adenocarcinoma

Por Schabath, Matthew B., Welsh, Eric A., Fulp, William J., Chen, Lu, Teer, Jamie K., Thompson, Zachary J., Engel, Brienne E., Xie, Mengyu, Berglund, Anders E., Creelan, Ben C., Antonia, Scott J., Gray, Jhanelle E., Eschrich, Steven, Chen, Dung-Tsa, Cress, W. Douglas, Haura, Eric B., Beg, Amer A.
Publicado no Oncogene (2015)

Informatics Methods to Enable Sharing of Quantitative Imaging Research Data

Por Levy, Mia A., Freymann, John B., Kirby, Justin S., Fedorov, Andriy, Fennessy, Fiona M., Eschrich, Steven A., Berglund, Anders E., Fenstermacher, David A., Tan, Yongqiang, Guo, Xiaotao, Casavant, Thomas L., Brown, Bartley J., Braun, Terry A., Dekker, Andre, Roelofs, Erik, Mountz, James M., Boada, Fernando, Laymon, Charles, Oborski, Matt, Rubin, Daniel L
Publicado em 2012

Micro-RNAs associated with the evolution of ovarian cancer cisplatin resistance

Por Boac, Bernadette M., Xiong, Yin, Marchion, Douglas C., Abbasi, Forough, Bush, Stephen H., Ramirez, Ingrid J., Khulpateea, Beman R., McClung, E. Clair, Berry, Amy L., Zgheib, Nadim Bou, Chon, Hye Sook, Shahzad, Mian M., Judson, Patricia L., Wenham, Robert M., Apte, Sachin M., Berglund, Anders E., Magliocco, Anthony M., Lancaster, Johnathan M.
Publicado no Gynecol Oncol (2015)