On pairwise distances and median score of three genomes under DCJ

por Aganezov, Sergey, Alekseyev, Max A
Publicado 2012

Estimation of the true evolutionary distance under the fragile breakage model

por Alexeev, Nikita, Alekseyev, Max A.
Publicado en BMC Genomics (2017)

CAMSA: a tool for comparative analysis and merging of scaffold assemblies

por Aganezov, Sergey S., Alekseyev, Max A.
Publicado en BMC Bioinformatics (2017)

Are There Rearrangement Hotspots in the Human Genome?

por Alekseyev, Max A, Pevzner, Pavel A
Publicado 2007

Breakpoint graphs and ancestral genome reconstructions

por Alekseyev, Max A., Pevzner, Pavel A.
Publicado 2009

Comparative genomics reveals birth and death of fragile regions in mammalian evolution

por Alekseyev, Max A, Pevzner, Pavel A
Publicado 2010

Comparative genomics meets topology: a novel view on genome median and halving problems

por Alexeev, Nikita, Avdeyev, Pavel, Alekseyev, Max A.
Publicado en BMC Bioinformatics (2016)

Implicit Transpositions in DCJ Scenarios

por Avdeyev, Pavel, Jiang, Shuai, Alekseyev, Max A.
Publicado en Front Genet (2017)

Linearization of Median Genomes Under the Double-Cut-and-Join-Indel Model

por Avdeyev, Pavel, Jiang, Shuai, Alekseyev, Max A
Publicado en Evol Bioinform Online (2019)

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

por Nikolenko, Sergey I, Korobeynikov, Anton I, Alekseyev, Max A
Publicado 2013

Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly

por Pham, Son K., Antipov, Dmitry, Sirotkin, Alexander, Tesler, Glenn, Pevzner, Pavel A., Alekseyev, Max A.
Publicado 2013

Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis

por Zamyatin, Anton, Avdeyev, Pavel, Liang, Jiangtao, Sharma, Atashi, Chen, Chujia, Lukyanchikova, Varvara, Alexeev, Nikita, Tu, Zhijian, Alekseyev, Max A, Sharakhov, Igor V
Publicado en Gigascience (2021)

TRAIL-Based High Throughput Screening Reveals a Link between TRAIL-Mediated Apoptosis and Glutathione Reductase, a Key Component of Oxidative Stress Response

por Rozanov, Dmitri, Cheltsov, Anton, Sergienko, Eduard, Vasile, Stefan, Golubkov, Vladislav, Aleshin, Alexander E., Levin, Trevor, Traer, Elie, Hann, Byron, Freimuth, Julia, Alexeev, Nikita, Alekseyev, Max A., Budko, Sergey P, Bächinger, Hans Peter, Spellman, Paul
Publicado en PLoS One (2015)

Transcriptome sequencing based annotation and homologous evidence based scaffolding of Anguilla japonica draft genome

por Liu, Yu-Chen, Hsu, Sheng-Da, Chou, Chih-Hung, Huang, Wei-Yun, Chen, Yu-Hung, Liu, Chia-Yu, Lyu, Guan-Jay, Huang, Shao-Zhen, Aganezov, Sergey, Alekseyev, Max A., Hsiao, Chung-Der, Huang, Hsien-Da
Publicado en BMC Genomics (2016)

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

por Bankevich, Anton, Nurk, Sergey, Antipov, Dmitry, Gurevich, Alexey A., Dvorkin, Mikhail, Kulikov, Alexander S., Lesin, Valery M., Nikolenko, Sergey I., Pham, Son, Prjibelski, Andrey D., Pyshkin, Alexey V., Sirotkin, Alexander V., Vyahhi, Nikolay, Tesler, Glenn, Alekseyev, Max A., Pevzner, Pavel A.
Publicado 2012

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

por Nurk, Sergey, Bankevich, Anton, Antipov, Dmitry, Gurevich, Alexey A., Korobeynikov, Anton, Lapidus, Alla, Prjibelski, Andrey D., Pyshkin, Alexey, Sirotkin, Alexander, Sirotkin, Yakov, Stepanauskas, Ramunas, Clingenpeel, Scott R., Woyke, Tanja, Mclean, Jeffrey S., Lasken, Roger, Tesler, Glenn, Alekseyev, Max A., Pevzner, Pavel A.
Publicado 2013

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

por Waterhouse, Robert M., Aganezov, Sergey, Anselmetti, Yoann, Lee, Jiyoung, Ruzzante, Livio, Reijnders, Maarten J. M. F., Feron, Romain, Bérard, Sèverine, George, Phillip, Hahn, Matthew W., Howell, Paul I., Kamali, Maryam, Koren, Sergey, Lawson, Daniel, Maslen, Gareth, Peery, Ashley, Phillippy, Adam M., Sharakhova, Maria V., Tannier, Eric, Unger, Maria F., Zhang, Simo V., Alekseyev, Max A., Besansky, Nora J., Chauve, Cedric, Emrich, Scott J., Sharakhov, Igor V.
Publicado en BMC Biol (2020)

“Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes”

por Neafsey, Daniel E., Waterhouse, Robert M., Abai, Mohammad R., Aganezov, Sergey S., Alekseyev, Max A., Allen, James E., Amon, James, Arcà, Bruno, Arensburger, Peter, Artemov, Gleb, Assour, Lauren A., Basseri, Hamidreza, Berlin, Aaron, Birren, Bruce W., Blandin, Stephanie A., Brockman, Andrew I., Burkot, Thomas R., Burt, Austin, Chan, Clara S., Chauve, Cedric, Chiu, Joanna C., Christensen, Mikkel, Costantini, Carlo, Davidson, Victoria L.M., Deligianni, Elena, Dottorini, Tania, Dritsou, Vicky, Gabriel, Stacey B., Guelbeogo, Wamdaogo M., Hall, Andrew B., Han, Mira V., Hlaing, Thaung, Hughes, Daniel S.T., Jenkins, Adam M., Jiang, Xiaofang, Jungreis, Irwin, Kakani, Evdoxia G., Kamali, Maryam, Kemppainen, Petri, Kennedy, Ryan C., Kirmitzoglou, Ioannis K., Koekemoer, Lizette L., Laban, Njoroge, Langridge, Nicholas, Lawniczak, Mara K.N., Lirakis, Manolis, Lobo, Neil F., Lowy, Ernesto, MacCallum, Robert M., Mao, Chunhong, Maslen, Gareth, Mbogo, Charles, McCarthy, Jenny, Michel, Kristin, Mitchell, Sara N., Moore, Wendy, Murphy, Katherine A., Naumenko, Anastasia N., Nolan, Tony, Novoa, Eva M., O'Loughlin, Samantha, Oringanje, Chioma, Oshaghi, Mohammad A., Pakpour, Nazzy, Papathanos, Philippos A., Peery, Ashley N., Povelones, Michael, Prakash, Anil, Price, David P., Rajaraman, Ashok, Reimer, Lisa J., Rinker, David C., Rokas, Antonis, Russell, Tanya L., Sagnon, N'Fale, Sharakhova, Maria V., Shea, Terrance, Simão, Felipe A., Simard, Frederic, Slotman, Michel A., Somboon, Pradya, Stegniy, Vladimir, Struchiner, Claudio J., Thomas, Gregg W.C., Tojo, Marta, Topalis, Pantelis, Tubio, José M.C., Unger, Maria F., Vontas, John, Walton, Catherine, Wilding, Craig S., Willis, Judith H., Wu, Yi-Chieh, Yan, Guiyun, Zdobnov, Evgeny M., Zhou, Xiaofan, Catteruccia, Flaminia, Christophides, George K., Collins, Frank H., Cornman, Robert S., Crisanti, Andrea, Donnelly, Martin J., Emrich, Scott J., Fontaine, Michael C., Gelbart, William, Hahn, Matthew W., Hansen, Immo A., Howell, Paul I., Kafatos, Fotis C., Kellis, Manolis, Lawson, Daniel, Louis, Christos, Luckhart, Shirley, Muskavitch, Marc A.T., Ribeiro, José M., Riehle, Michael A., Sharakhov, Igor V., Tu, Zhijian, Zwiebel, Laurence J., Besansky, Nora J.
Publicado en Science (2014)