Halorhodopsin pumps Cl(–) and bacteriorhodopsin pumps protons by a common mechanism that uses conserved electrostatic interactions

Por Song, Yifan, Gunner, M. R.
Publicado no Proc Natl Acad Sci U S A (2014)

MCCE2: Improving Protein pK(a) Calculations with Extensive Side Chain Rotamer Sampling

Por SONG, YIFAN, MAO, JUNJUN, GUNNER, M. R.
Publicado em 2009

Electrostatic Environment of Hemes in Proteins: pK(a)s of Hydroxyl Ligands

Por Song, Yifan, Mao, Junjun, Gunner, M. R.
Publicado em 2006

Calculated Proton Uptake on Anaerobic Reduction of Cytochrome c Oxidase: Is the Reaction Electroneutral?

Por Song, Yifan, Michonova-Alexova, Ekaterina, Gunner, M. R.
Publicado em 2006

Sequence-based prediction of physicochemical interactions at protein functional sites using a function-and-interaction-annotated domain profile database

Por Han, Min, Song, Yifan, Qian, Jiaqiang, Ming, Dengming
Publicado no BMC Bioinformatics (2018)

Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations?

Por Gunner, M.R., Mao, Junjun, Song, Yifan, Kim, Jinrang
Publicado em 2006

Pseudorevertants of a Semliki Forest Virus Fusion-Blocking Mutation Reveal a Critical Interchain Interaction in the Core Trimer

Por Liu, Catherine Y., Besanceney, Christen, Song, Yifan, Kielian, Margaret
Publicado em 2010

Long term results after double and single bundle ACL reconstruction: Is there any difference? A meta - analysis of randomized controlled trials

Por Dong, Zhenyue, Niu, Yingzhen, Qi, Jianchao, Song, Yifan, Wang, Fei
Publicado no Acta Orthop Traumatol Turc (2019)

Structure-guided forcefield optimization

Por Song, Yifan, Tyka, Michael, Leaver-Fay, Andrew, Thompson, James, Baker, David
Publicado em 2011

Alternative Polyadenylation: Methods, Findings, and Impacts

Por Chen, Wei, Jia, Qi, Song, Yifan, Fu, Haihui, Wei, Gang, Ni, Ting
Publicado no Genomics Proteomics Bioinformatics (2017)

Evaluation of Trochlear Dysplasia Severity Using Trochlear Angle: A Retrospective Study Based on Computed Tomography (CT) Scans

Por Dong, Zhenyue, Niu, Yingzhen, Duan, Guman, Song, Yifan, Qi, Jianchao, Wang, Fei
Publicado no Med Sci Monit (2018)

One contact for every twelve residues allows robust and accurate topology-level protein structure modeling

Por Kim, David E., DiMaio, Frank, Wang, Ray Yu-Ruei, Song, Yifan, Baker, David
Publicado em 2013

Prediction of Protein Mutational Free Energy: Benchmark and Sampling Improvements Increase Classification Accuracy

Por Frenz, Brandon, Lewis, Steven M., King, Indigo, DiMaio, Frank, Park, Hahnbeom, Song, Yifan
Publicado no Front Bioeng Biotechnol (2020)

Massively parallel determination and modeling of endonuclease substrate specificity

Por Thyme, Summer B., Song, Yifan, Brunette, T. J., Szeto, Mindy D., Kusak, Lara, Bradley, Philip, Baker, David
Publicado no Nucleic Acids Res (2014)

Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta

Por Wang, Ray Yu-Ruei, Song, Yifan, Barad, Benjamin A, Cheng, Yifan, Fraser, James S, DiMaio, Frank
Publicado no eLife (2016)

Prevalence of diabetic retinopathy among 13473 patients with diabetes mellitus in China: a cross-sectional epidemiological survey in six provinces

Por Liu, Yan, Song, Yifan, Tao, Liyuan, Qiu, Weiqiang, Lv, Huibin, Jiang, Xiaodan, Zhang, Mingzhou, Li, Xuemin
Publicado no BMJ Open (2017)

Antisense transcription regulates the expression of sense gene via alternative polyadenylation

Por Shen, Ting, Li, Huan, Song, Yifan, Yao, Jun, Han, Miao, Yu, Ming, Wei, Gang, Ni, Ting
Publicado no Protein Cell (2017)

Idiopathic renal hypouricemia: A case report and literature review

Por Wang, Cuiyu, Wang, Jin, Liu, Song, Liang, Xinhua, Song, Yifan, Feng, Ling, Zhong, Lanxin, Guo, Xiaohua
Publicado no Mol Med Rep (2019)

Matrine treatment reduces retinal ganglion cell apoptosis in experimental optic neuritis

Por Kang, Jian, Liu, Shuqing, Song, Yifan, Chu, Yaojuan, Wang, Mengru, Shi, Yamin, Zhang, Fengyan, Zhu, Lin
Publicado no Sci Rep (2021)

High resolution comparative modeling with RosettaCM

Por Song, Yifan, DiMaio, Frank, Wang, Ray Yu-Ruei, Kim, David, Miles, Chris, Brunette, TJ, Thompson, James, Baker, David
Publicado em 2013