Resultados da pesquisa - ((alphabet inc) OR (alphabet amino)).

1

On the evolution of the standard amino-acid alphabet

Por Lu, Yi, Freeland, Stephen
Publicado em 2006

“...Although one standard amino-acid 'alphabet' is used by most organisms on Earth, the evolutionary...”
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The amino acid alphabet and the architecture of the protein sequence-structure map. I. Binary alphabets.

Por Evandro Ferrada
Publicado em 2014-12-01

“... evolution of the natural amino acid alphabet....”
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The Amino Acid Alphabet and the Architecture of the Protein Sequence-Structure Map. I. Binary Alphabets

Por Ferrada, Evandro
Publicado no PLoS Comput Biol (2014)

“... evolution of the natural amino acid alphabet....”
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Extending enzyme molecular recognition with an expanded amino acid alphabet

Por Windle, Claire L., Simmons, Katie J., Ault, James R., Trinh, Chi H., Nelson, Adam, Pearson, Arwen R., Berry, Alan
Publicado no Proc Natl Acad Sci U S A (2017)

“... demonstrate that expansion of the alphabet of amino acids can also enable the properties of enzymes...”
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Evolution as a Guide to Designing xeno Amino Acid Alphabets

Por Mayer-Bacon, Christopher, Agboha, Neyiasuo, Muscalli, Mickey, Freeland, Stephen
Publicado no Int J Mol Sci (2021)

“... the chemical logic by which life’s standard alphabet of 20 genetically encoded amino acids evolved...”
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Recognizing protein–protein interfaces with empirical potentials and reduced amino acid alphabets

Por Launay, Guillaume, Mendez, Raul, Wodak, Shoshana, Simonson, Thomas
Publicado em 2007

“... hierarchy of amino acid alphabets of increasing complexity, with 2, 3, 4, 6, and 20 amino acid groups...”
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Reduced amino acid alphabets exhibit an improved sensitivity and selectivity in fold assignment

Por Peterson, Eric L., Kondev, Jané, Theriot, Julie A., Phillips, Rob
Publicado em 2009

“... success in various applications is the concept of a reduced amino acid alphabet, wherein similar amino...”
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Use of a structural alphabet to find compatible folds for amino acid sequences

Por Mahajan, Swapnil, de Brevern, Alexandre G, Sanejouand, Yves-Henri, Srinivasan, Narayanaswamy, Offmann, Bernard
Publicado no Protein Sci (2015)

“... the conditional probabilities for the amino-acid sequence of a protein to fit to known protein 3D structures using...”
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Multiple-alphabet amino acid sequence comparisons of the immunoglobulin kappa-chain constant domain.

Por Karlin, S, Ghandour, G
Publicado em 1985

“... of human, mouse, and rabbit by using four classification schemes ("alphabets") of the 20 amino acids based...”
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Adaptive Properties of the Genetically Encoded Amino Acid Alphabet Are Inherited from Its Subsets

Por Ilardo, Melissa, Bose, Rudrarup, Meringer, Markus, Rasulev, Bakhtiyor, Grefenstette, Natalie, Stephenson, James, Freeland, Stephen, Gillams, Richard J., Butch, Christopher J., Cleaves, H. James
Publicado no Sci Rep (2019)

“...Life uses a common set of 20 coded amino acids (CAAs) to construct proteins. This set was likely...”
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Local homology recognition and distance measures in linear time using compressed amino acid alphabets

Por Edgar, Robert C.
Publicado em 2004

“... sequences of length L, these methods have O(L) time complexity. The ability of compressed amino acid...”
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A Simplified Amino Acidic Alphabet to Unveil the T-Cells Receptors Antigens: A Computational Perspective

Por Iannuzzi, Raffaele, Rossetti, Grazisa, Spitaleri, Andrea, Bonnal, Raoul J. P., Pagani, Massimiliano, Mollica, Luca
Publicado no Front Chem (2021)

“... representative of all ensembles of 20 natural amino acids. Such a simplified alphabet is able to correctly find...”
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Prediction of Metal Ion Binding Sites in Proteins from Amino Acid Sequences by Using Simplified Amino Acid Alphabets and Random Forest Model

Por Kumar, Suresh
Publicado no Genomics Inform (2017)

“... of bioinformatics based on the fact all the information contains in amino acid sequence. In this study, random...”
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Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets

Por Albayrak, Aydin, Otu, Hasan H, Sezerman, Ugur O
Publicado em 2010

“... Relative Complexity Measure (RCM) combined with reduced amino acid alphabets to cluster protein families...”
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Reduced alphabet of prebiotic amino acids optimally encodes the conformational space of diverse extant protein folds

Por Solis, Armando D.
Publicado no BMC Evol Biol (2019)

“... to the expansion of the full amino acid alphabet....”
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iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition

Por Liu, Bin, Xu, Jinghao, Lan, Xun, Xu, Ruifeng, Zhou, Jiyun, Wang, Xiaolong, Chou, Kuo-Chen
Publicado em 2014

“... information and the amino acid reduced alphabet profile into the general pseudo amino acid composition (PseAAC...”
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RAACBook: a web server of reduced amino acid alphabet for sequence-dependent inference by using Chou’s five-step rule

Por Zheng, Lei, Huang, Shenghui, Mu, Nengjiang, Zhang, Haoyue, Zhang, Jiayu, Chang, Yu, Yang, Lei, Zuo, Yongchun
Publicado no Database (Oxford) (2019)

“...By reducing amino acid alphabet, the protein complexity can be significantly simplified, which...”
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Amino acid Alphabet Size in Protein Evolution Experiments: Better to Search a Small library Thoroughly or a Large Library Sparsely?

Por Muñoz, Enrique, Deem, Michael W.
Publicado no Protein Eng Des Sel (2008)

“... diverse, larger library sparsely. We study protein evolution with reduced amino acid alphabets...”
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On the use of direct-coupling analysis with a reduced alphabet of amino acids combined with super-secondary structure motifs for protein fold prediction

Por Anton, Bernat, Besalú, Mireia, Fornes, Oriol, Bonet, Jaume, Molina, Alexis, Molina-Fernandez, Ruben, De las Cuevas, Gemma, Fernandez-Fuentes, Narcis, Oliva, Baldo
Publicado no NAR Genom Bioinform (2021)

“... by grouping amino acids into only two groups (polar and non-polar) is still representative...”
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Automated Alphabet Reduction for Protein Datasets

Por Bacardit, Jaume, Stout, Michael, Hirst, Jonathan D, Valencia, Alfonso, Smith, Robert E, Krasnogor, Natalio
Publicado em 2009

“... the full amino acid alphabet. Moreover, the automatically designed alphabets were compared against other...”
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