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Local homology recognition and distance measures in linear time using compressed amino acid alphabets
Methods for discovery of local similarities and estimation of evolutionary distance by identifying k-mers (contiguous subsequences of length k) common to two sequences are described. Given unaligned sequences of length L, these methods have O(L) time complexity. The ability of compressed amino acid...
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| Format: | Artigo |
| Idioma: | Inglês |
| Publicat: |
Oxford University Press
2004
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| Matèries: | |
| Accés en línia: | https://ncbi.nlm.nih.gov/pmc/articles/PMC373290/ https://ncbi.nlm.nih.gov/pubmed/14729922 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gkh180 |
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