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Local homology recognition and distance measures in linear time using compressed amino acid alphabets

Methods for discovery of local similarities and estimation of evolutionary distance by identifying k-mers (contiguous subsequences of length k) common to two sequences are described. Given unaligned sequences of length L, these methods have O(L) time complexity. The ability of compressed amino acid...

Ausführliche Beschreibung

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Bibliographische Detailangaben
1. Verfasser: Edgar, Robert C.
Format: Artigo
Sprache:Inglês
Veröffentlicht: Oxford University Press 2004
Schlagworte:
Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC373290/
https://ncbi.nlm.nih.gov/pubmed/14729922
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gkh180
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