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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data

Joint scaling laws in functional and evolutionary categories in prokaryotic genomes
Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data

Investigating the predictability of essential genes across distantly related organisms using an integrative approach
A tunable zinc finger-based framework for Boolean logic computation in mammalian cells

Topological constraints strongly affect chromatin reconstitution in silico
Ultraconserved cDNA segments in the human transcriptome exhibit resistance to folding and implicate function in translation and alternative splicing

Predicting single-cell gene expression profiles of imaging flow cytometry data with machine learning
Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs

The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity
Adenita: interactive 3D modelling and visualization of DNA nanostructures

Microbial species delineation using whole genome sequences
Molecular mechanisms of system responses to novel stimuli are predictable from public data

GeneWeaver: a web-based system for integrative functional genomics
oGNM: online computation of structural dynamics using the Gaussian Network Model

Cryptic splice sites and split genes
The mouse genome database (MGD): new features facilitating a model system

Positional clustering improves computational binding site detection and identifies novel cis-regulatory sites in mammalian GABA(A) receptor subunit genes
Topology-based cancer classification and related pathway mining using microarray data

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