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The RIB element in the goaG-pspF intergenic region of Escherichia coli.
Computational methods for protein structure prediction and modeling

Computational Prediction of Atomic Structures of Helical Membrane Proteins Aided by EM Maps
Computer Modeling of the Structure and Spectra of Fluorescent Proteins

Computational modeling of membrane proteins
Robust classification of protein variation using structural modelling and large-scale data integration

Computational analysis and predictive modeling of polymorph descriptors
Computational modeling of protein mutant stability: analysis and optimization of statistical potentials and structural features reveal insights into prediction model development

Predicting transcription factor specificity with all-atom models
Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing data

Rigorous performance evaluation in protein structure modelling and implications for computational biology
Computational reconstruction of atomistic protein structures from coarse-grained models

A feature-based approach to modeling protein–protein interaction hot spots
Computational protein structure modeling and analysis of UV-B stress protein in Synechocystis PCC 6803

ModeRNA: a tool for comparative modeling of RNA 3D structure
Advances in the Development and Application of Computational Methodologies for Structural Modeling of G-Protein Coupled Receptors

Comparative modeling of retinol-binding protein-3 and retinal S-antigen in Eales’ disease and prediction of their binding sites using computational methods
GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains

Predicted binding site information improves model ranking in protein docking using experimental and computer-generated target structures
Computational Methods for Predicting Protein-Protein Interactions Using Various Protein Features

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