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BioDIFF: An Effective Fast Change Detection Algorithm for Biological Annotations
Open Data Structures: An Introduction

DBS: a fast and informative segmentation algorithm for DNA copy number analysis
DBS: a fast and informative segmentation algorithm for DNA copy number analysis

The Index-Based Subgraph Matching Algorithm (ISMA): Fast Subgraph Enumeration in Large Networks Using Optimized Search Trees
A highly efficient multi-core algorithm for clustering extremely large datasets

MET: a Java package for fast molecule equivalence testing
Trie-based Rule Processing for Clinical NLP: a use-case study of n-trie, making the ConText algorithm more efficient and scalable

BatMass: a Java software platform for LC/MS data visualization in proteomics and metabolomics
MutScan: fast detection and visualization of target mutations by scanning FASTQ data

GC4S: A bioinformatics-oriented Java software library of reusable graphical user interface components
FastPval: a fast and memory efficient program to calculate very low P-values from empirical distribution

Genometa--a fast and accurate classifier for short metagenomic shotgun reads.
Genometa - A Fast and Accurate Classifier for Short Metagenomic Shotgun Reads

Deconvolution of Two-Dimensional NMR Spectra by Fast Maximum Likelihood Reconstruction: Application to Quantitative Metabolomics
SmartPhase: Accurate and fast phasing of heterozygous variant pairs for genetic diagnosis of rare diseases

ROMA: Representation and Quantification of Module Activity from Target Expression Data
TraceSpecks: A Software for Automated Idealization of Noisy Patch-Clamp and Imaging Data

miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data
C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search

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